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Rat connectome



Region dorsal to suprachiasmatic nucleus left


Abbreviation
SChDT
Color       
Superior regionsSuprachiasmatic nucleus

SynonymsAbbr.Language
Region dorsal to suprachiasmatic nucleusSChDTEng

Output to

NameSideAbbr.WeightDetails
Medial eminence internal layeripsiMEI1
Median eminence external layeripsiMEeL1
Medial septal nucleusipsiMS1
Medial preoptic areaipsiMPA-0.5
Medial preoptic area dorsal partipsiMPAD-0.5
Medial preoptic area ventral partipsiMPAV0.5
Anterodorsal preoptic nucleusipsiADP3
Medial preoptic nucleusipsiMPO0
Ventrolateral preoptic nucleusipsiVLPO1
Dorsomedial hypothalamic nucleusipsiDMHy2
Lateral zoneipsiLHA-0.5
Anterior hypothalamic areaipsiAHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anteroventral preoptic nucleusipsiAnV0.5
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic area at level of the posterior commissureipsiPHApc1
Cell-sparse zone between Pe and AHAipsicsMHA3
Between ventral border of Pa and dorsal border of AHAipsibvbMHA3
Cell-sparse zone dorsal and medial to VMH ipsicszMHA2
Along anteroventral preoptic nucleus and VOLTipsiavpMHA1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus cell sparse zone surrounding areaipsiVMHSurcs2
Anterior periventricular nucleusipsiPeA1
Arcuate nucleusipsiArc1.5
Area around the suprachiasmatic nucleusipsiAASCh3
Paraventricular hypothalamic nucleus dorsal partipsiPaD1
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP2
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Paraventricular hypothalamic nucleus rostral partipsiPaRo3
Paraventricular nucleus medial partipsiPame1
Preoptic periventricular nucleusipsiPePO3
Suprachiasmatic nucleusipsiSCh0
Medial mammillary nucleusipsiMMn1
Rhomboid thalamic nucleusipsiRh0.5
Paratenial thalamic nucleusipsiPT4
Paraventricular thalamic nucleusipsiPV4
Reuniens thalamic nucleusipsiRe0.5
Bed nucleus of the stria terminalis caudal partipsiBSTCa1
Bed nucleus of the stria terminalis preoptic continuationipsiBSTpoc3
Intergeniculate leafipsiIGL1
Ventral lateral geniculate nucleusipsiVLG1
Lateral septal nucleusipsiLS2.5
Lateral septal nucleus intermediate part ventral subdivisionipsiLSVIV1
Lateral septal nucleus ventral partipsiLSV1
Medial eminence internal layercontraMEI-0.5
Median eminence external layercontraMEeL-0.5
Medial septal nucleuscontraMS-0.5
Medial preoptic areacontraMPA-0.5
Medial preoptic area dorsal partcontraMPAD-0.5
Medial preoptic area ventral partcontraMPAV-0.5
Anterodorsal preoptic nucleuscontraADP-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Anterior hypothalamic areacontraAHA-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe-0.5
Anteroventral preoptic nucleuscontraAnV-0.5
Posterior hypothalamic areacontraPHA-0.5
Posterior hypothalamic area at level of the posterior commissurecontraPHApc-0.5
Cell-sparse zone between Pe and AHAcontracsMHA1
Between ventral border of Pa and dorsal border of AHAcontrabvbMHA-0.5
Cell-sparse zone dorsal and medial to VMH contracszMHA-0.5
Along anteroventral preoptic nucleus and VOLTcontraavpMHA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus cell sparse zone surrounding areacontraVMHSurcs-0.5
Anterior periventricular nucleuscontraPeA-0.5
Arcuate nucleuscontraArc-0.5
Area around the suprachiasmatic nucleuscontraAASCh-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partcontraPaMagP-0.5
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Paraventricular hypothalamic nucleus rostral partcontraPaRo-0.5
Preoptic periventricular nucleuscontraPePO-0.5
Medial mammillary nucleuscontraMMn-0.5
Rhomboid thalamic nucleuscontraRh-0.5
Paratenial thalamic nucleuscontraPT-0.5
Paraventricular thalamic nucleuscontraPV-0.5
Reuniens thalamic nucleuscontraRe-0.5
Bed nucleus of the stria terminalis caudal partcontraBSTCa-0.5
Bed nucleus of the stria terminalis preoptic continuationcontraBSTpoc-0.5
Intergeniculate leafcontraIGL-0.5
Ventral lateral geniculate nucleuscontraVLG-0.5
Lateral septal nucleuscontraLS-0.5
Lateral septal nucleus intermediate part ventral subdivisioncontraLSVIV-0.5
Lateral septal nucleus ventral partcontraLSV-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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