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Rat connectome



Caudal hypothalamus left


Abbreviation
HYPOC
Color       
Superior regionsHypothalamus

SynonymsAbbr.Language
Caudal hypothalamic area Eng
Caudal hypothalamusHYPOCLat

SubregionsSide
Medial area of the caudal hypothalamusleft
Lateral area of the caudal hypothalamusleft

Output to

NameSideAbbr.WeightDetails
Dorsal periaqueductal grayipsiDPAG3
Dorsolateral periaqueductal grayipsiDLPAG3
Lateral periaqueductal grayipsiLPAG0.5
Ventrolateral periaqueductal grayipsiVLPAG0.5
Dorsal motor nucleus of vagusipsi10-0.5
Border area of the medial septal nucleusipsiBaMS-0.5
Medial part of the dorsolateral medial septal nucleusipsiMDLMS-0.5
Lateral mammillary nucleusipsiLM1
Medial mammillary nucleusipsiMMn1
Auditory regionsipsiAU3
Olfactory tubercle polymorph layeripsiTuOpo-0.5
Intermediolateral septal areaipsiSERimL-0.5
Spinal cord layer 1 C1ipsiSCL1C1-0.5
Spinal cord layer 1 C2ipsiSCL1C2-0.5
Spinal cord layer 1 C3ipsiSCL1C3-0.5
Spinal cord layer 1 C4ipsiSCL1C4-0.5
Spinal cord layer 1 C5ipsiSCL1C5-0.5
Spinal cord layer 1 C6ipsiSCL1C6-0.5
Spinal cord layer 1 C7ipsiSCL1C7-0.5
Spinal cord layer 1 C8ipsiSCL1C8-0.5
Sympathetic preganglionic cell column T1ipsiSpIMLT1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Sympathetic preganglionic cell column T2ipsiSpIMLT2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Sympathetic preganglionic cell column T3ipsiSpIMLT3-0.5
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Sympathetic preganglionic cell column T4ipsiSpIMLT4-0.5
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Sympathetic preganglionic cell column T5ipsiSpIMLT5-0.5
Spinal cord layer 1 T5ipsiSCL1T5-0.5
Sympathetic preganglionic cell column T6ipsiSpIMLT6-0.5
Spinal cord layer 1 T6ipsiSCL1T6-0.5
Sympathetic preganglionic cell column T7ipsiSpIMLT7-0.5
Spinal cord layer 1 T7ipsiSCL1T7-0.5
Sympathetic preganglionic cell column T8ipsiSpIMLT8-0.5
Spinal cord layer 1 T8ipsiSCL1T8-0.5
Sympathetic preganglionic cell column T9ipsiSpIMLT9-0.5
Spinal cord layer 1 T9ipsiSCL1T9-0.5
Sympathetic preganglionic cell column T10ipsiSpIMLT10-0.5
Spinal cord layer 1 T10ipsiSCL1T10-0.5
Sympathetic preganglionic cell column T11ipsiSpIMLT11-0.5
Spinal cord layer 1 T11ipsiSCL1T11-0.5
Sympathetic preganglionic cell column T12ipsiSpIMLT12-0.5
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Sympathetic preganglionic cell column T13ipsiSpIMLT13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Sympathetic preganglionic cell column L1ipsiSpIMLL1-0.5
Lumbar parasympathetic nucleus L1ipsiLPSyL1-0.5
Spinal cord layer 1 L1ipsiSCL1L1-0.5
Sympathetic preganglionic cell column L2ipsiSpIMLL2-0.5
Lumbar parasympathetic nucleus L2ipsiLPSyL2-0.5
Spinal cord layer 1 L2ipsiSCL1L2-0.5
Sympathetic preganglionic cell column L3ipsiSpIMLL3-0.5
Lumbar parasympathetic nucleus L3ipsiLPSyL3-0.5
Spinal cord layer 1 L3ipsiSCL1L3-0.5
Lumbar parasympathetic nucleus L4ipsiLPSyL4-0.5
Spinal cord layer 1 L4ipsiSCL1L4-0.5
Lumbar parasympathetic nucleus L5ipsiLPSyL5-0.5
Spinal cord layer 1 L5ipsiSCL1L5-0.5
Lumbar parasympathetic nucleus L6ipsiLPSyL6-0.5
Spinal cord layer 1 L6ipsiSCL1L6-0.5
Sacral parasympathetic nucleus S1ipsiSPSyS1-0.5
Spinal cord layer 1 S1ipsiSCL1S1-0.5
Sacral parasympathetic nucleus S2ipsiSPSyS2-0.5
Spinal cord layer 1 S2ipsiSCL1S2-0.5
Sacral parasympathetic nucleus S3ipsiSPSyS3-0.5
Spinal cord layer 1 S3ipsiSCL1S3-0.5
Sacral parasympathetic nucleus S4ipsiSPSyS4-0.5
Spinal cord layer 1 S4ipsiSCL1S4-0.5
Spinal cord layer 1 Co1ipsiSCL1Co1-0.5
Spinal cord layer 1 Co2ipsiSCL1Co2-0.5
Spinal cord layer 1 Co3ipsiSCL1Co3-0.5
Dorsal periaqueductal graycontraDPAG-0.5
Dorsolateral periaqueductal graycontraDLPAG-0.5
Auditory regionscontraAU3
Spinal cord layer 1 C1contraSCL1C1-0.5
Spinal cord layer 1 C2contraSCL1C2-0.5
Spinal cord layer 1 C3contraSCL1C3-0.5
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 1 C6contraSCL1C6-0.5
Spinal cord layer 1 C7contraSCL1C7-0.5
Spinal cord layer 1 C8contraSCL1C8-0.5
Sympathetic preganglionic cell column T1contraSpIMLT1-0.5
Spinal cord layer 1 T1contraSCL1T1-0.5
Sympathetic preganglionic cell column T2contraSpIMLT2-0.5
Spinal cord layer 1 T2contraSCL1T2-0.5
Sympathetic preganglionic cell column T3contraSpIMLT3-0.5
Spinal cord layer 1 T3contraSCL1T3-0.5
Sympathetic preganglionic cell column T4contraSpIMLT4-0.5
Spinal cord layer 1 T4contraSCL1T4-0.5
Sympathetic preganglionic cell column T5contraSpIMLT5-0.5
Spinal cord layer 1 T5contraSCL1T5-0.5
Sympathetic preganglionic cell column T6contraSpIMLT6-0.5
Spinal cord layer 1 T6contraSCL1T6-0.5
Sympathetic preganglionic cell column T7contraSpIMLT7-0.5
Spinal cord layer 1 T7contraSCL1T7-0.5
Sympathetic preganglionic cell column T8contraSpIMLT8-0.5
Spinal cord layer 1 T8contraSCL1T8-0.5
Sympathetic preganglionic cell column T9contraSpIMLT9-0.5
Spinal cord layer 1 T9contraSCL1T9-0.5
Spinal cord layer 1 T10contraSCL1T10-0.5
Sympathetic preganglionic cell column T11contraSpIMLT11-0.5
Spinal cord layer 1 T11contraSCL1T11-0.5
Sympathetic preganglionic cell column T12contraSpIMLT12-0.5
Spinal cord layer 1 T12contraSCL1T12-0.5
Sympathetic preganglionic cell column T13contraSpIMLT13-0.5
Spinal cord layer 1 T13contraSCL1T13-0.5
Sympathetic preganglionic cell column L1contraSpIMLL1-0.5
Lumbar parasympathetic nucleus L1contraLPSyL1-0.5
Spinal cord layer 1 L1contraSCL1L1-0.5
Sympathetic preganglionic cell column L2contraSpIMLL2-0.5
Lumbar parasympathetic nucleus L2contraLPSyL2-0.5
Spinal cord layer 1 L2contraSCL1L2-0.5
Sympathetic preganglionic cell column L3contraSpIMLL3-0.5
Lumbar parasympathetic nucleus L3contraLPSyL3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Lumbar parasympathetic nucleus L4contraLPSyL4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Lumbar parasympathetic nucleus L5contraLPSyL5-0.5
Spinal cord layer 1 L5contraSCL1L5-0.5
Lumbar parasympathetic nucleus L6contraLPSyL6-0.5
Spinal cord layer 1 L6contraSCL1L6-0.5
Sacral parasympathetic nucleus S1contraSPSyS1-0.5
Spinal cord layer 1 S1contraSCL1S1-0.5
Sacral parasympathetic nucleus S2contraSPSyS2-0.5
Spinal cord layer 1 S2contraSCL1S2-0.5
Sacral parasympathetic nucleus S3contraSPSyS3-0.5
Spinal cord layer 1 S3contraSCL1S3-0.5
Sacral parasympathetic nucleus S4contraSPSyS4-0.5
Spinal cord layer 1 S4contraSCL1S4-0.5
Spinal cord layer 1 Co1contraSCL1Co1-0.5
Spinal cord layer 1 Co2contraSCL1Co2-0.5
Spinal cord layer 1 Co3contraSCL1Co3-0.5

Input from

NameSideAbbr.WeightDetails
Anterior basomedial nucleusipsiBMA2
Subiculum ventral partipsiSv-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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