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Rat connectome



Spinal cord layer 1 L6 left


Abbreviation
SCL1L6
Color       
Superior regionsSuperficial dorsal horn L6

SynonymsAbbr.Language
Spinal cord layer 1 L6SCL1L6Eng

SubregionsSide
Spinal cord layer 1 L6 interneuronsleft
Lateral part of the spinal cord layer 1 L6left
Marginal cells of Waldeyer L6left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG1
Central gray medial partipsiCGMe-0.5
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG3
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray caudal partipsiPAGc3
Periaqueductal gray lateroventral partipsiPAGLV0.5
Periaqueductal gray rostral partipsiPAGR0.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Red nucleusipsiR-0.5
Prerubral fieldipsiPR-3
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Superior colliculus deep layersipsiSCd1.5
Laterodorsal tegmental nucleusipsiLDTg0
Edinger Westphal nucleusipsiEW-0.5
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC3
Reticular systemipsiRF0.5
Medial reticular formationipsiRFm3
Ventral part of the medial reticular formationipsiRFmV-0.5
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral part dorsolateral partipsiPnODL1
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus medialipsiPBnMe1
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Parabrachial nucleus superior lateralipsiPBSL0
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Parvicellular reticular nucleusipsiPCRt-0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM-0.5
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
GracileipsiGra1
HypothalamusipsiHYPO1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Anteromedial thalamic nucleusipsiAM-3
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Rhomboid thalamic nucleusipsiRh-3
Lateral group of the dorsal thalamusipsiLAT0
Posterior thalamic nuclear groupipsiPo1
Posterior thalamic nuclear group triangular partipsiPoT0.5
Submedius thalamic nucleusipsiSub0.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL1
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Ventromedial thalamic nucleusipsiVM-3
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Medial thalamic zoneipsiMTZ0
Posterior groupipsiPTG0.5
Ventral medial nucleus of the thalamusipsiVMT-3
Anterior pretectal nucleusipsiAPT-0.5
Posterior pretectal nucleusipsiPPT-0.5
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Ventral horn C1ipsiVHC10.5
Cervical segment 2ipsiCS21
Ventral horn C2ipsiVHC20.5
Cervical segment 3ipsiCS31
Ventral horn C3ipsiVHC30.5
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Mid thoracal segmentsipsiTSegM-2
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Area X L4ipsiSCL10L41
Spinal cord layer 8 L4ipsiSCL8L41
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL51
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL61
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa11
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa21
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray caudal partcontraPAGc1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray rostral partcontraPAGR0.5
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Inferior colliculuscontraICOL3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC3
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Laterodorsal tegmental nucleuscontraLDTg0
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Barringtons nucleuscontraBar0.5
Locus coeruleuscontraLC1.5
Reticular systemcontraRF1
Medial reticular formationcontraRFm-0.5
Ventral part of the medial reticular formationcontraRFmV-0.5
Mesencephalic reticular formationcontraMRF3
Deep mesencephalic nucleuscontraDpMe1
Pontine reticular nucleus oral part dorsolateral partcontraPnODL0.5
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus dorsal partcontraLPBD-0.5
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL2
Parabrachial nucleus dorsolateral partcontraPBDL2
Parabrachial nucleus medialcontraPBnMe0.5
Parabrachial nucleus superior lateralcontraPBSL2
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleuscontraMdD-0.5
Subnucleus reticularis dorsaliscontraSRD1
Medullary reticular nucleus dorsal partcontraMdDd1
Parvicellular reticular nucleuscontraPCRt-0.5
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Spinal trigeminal nucleuscontraSp5nc-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
HypothalamuscontraHYPO3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL1.5
Paracentral thalamic nucleuscontraPC1.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Posterior thalamic nuclear groupcontraPo3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Submedius thalamic nucleuscontraSub0.5
Ventrolateral thalamic nucleuscontraVL3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN1.5
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Medial thalamic zonecontraMTZ-0.5
Posterior groupcontraPTG0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS10
Ventral horn C1contraVHC11
Cervical segment 2contraCS20
Ventral horn C2contraVHC21
Cervical segment 3contraCS30
Ventral horn C3contraVHC31
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 7contraCS70
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 5contraT50
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 11contraT110
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 3contraSa30
Sacral segment 4contraSa40
Sciatic nerveipsisci1
StomachipsiOrgsStomS-1
Biceps femoris muscleipsiMuscBF-0.5
Bulbospongiosus muscleipsiMuscbsp1
External urethral sphincter muscleipsiMuscEUS-0.5
Ischiocavernosus muscleipsiMuscicav-10
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
ClitorisipsiOrgCLi-0.5
CervixipsiOrgUTC2
Biceps femoris musclecontraMuscBF-0.5
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C0.5
A5 noradrenaline cells rostral partipsiA5R0.5
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular nucleus ventral posterior medial partipsiPaVePM3
Caudal hypothalamusipsiHYPOC-0.5
Tuberal cell group located in the arcuate nucleus and in the adjacent part of the periventricular nucleusipsiA12-0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL33
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL43
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL53
Dorsal root ganglion L6ipsiDRGL63
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cells caudal partcontraA5C0.5
A5 noradrenaline cells rostral partcontraA5R0.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Caudal hypothalamuscontraHYPOC-0.5
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl2
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS12
Dorsal root ganglion L6contraDRGL62
Dorsal penile nerveipsidpn1
Femoral nerveipsifem1
Lateral femoral cutaneous nerveipsifemLC-0.5
Peronal nerveipsiperonal1
Common peronal nerveipsicperonal-0.5
Posterior femoral cutaneous nerveipsifemPC-0.5
Saphenus nerveipsisaph0
Sural nerveipsisural-0.5
Muscle branch of femoral nerveipsifemm0
Anterior femoral cutaneous nerveipsiafem0
Hamstring nerveipsihamstri2
Pudendal nerveipsipude-0.5
Ventral branch of the pudendal nerveipsipudeVb3
Dorsal branch of the pudendal nerveipsipudedb3
Saphenous nerveipsispn-0.5
Sciatic nerveipsisci3
Tibial nerveipsitibial-0.5
Obturator nerveipsiobturat-0.5
Lateral plantar nerveipsilpn-0.5
Medial plantar nerveipsimpn-0.5
Posterior femoral cutaneous nervecontrafemPC0
Ventral branch of the pudendal nervecontrapudeVb0
Dorsal branch of the pudendal nervecontrapudedb0
ColonipsiOrgsColonS-0.5
ColoncontraOrgsColonS-0.5
Medial malleolus skinipsiOrgFmema-0.5
Hindpaw digit 1ipsiOrgHPD1-0.5
Hindpaw digit 2ipsiOrgHPD2-0.5
Hindpaw digit 4ipsiOrgHPD4-0.5
Hindpaw digit 5ipsiOrgHPD51
Hindpaw skinipsiOrgHPS-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Subcutaneous nipple region of the mammary gland M6ipsiOrgsMamM61
Urinary bladderipsiOrgUrBLa-0.5
Subcutaneous nipple region of the mammary gland M6contraOrgsMamM6-1
Urinary bladdercontraOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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