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Rat connectome



Spinal cord layer 1 T2 right


Abbreviation
SCL1T2
Color       
Superior regionsSuperficial dorsal horn T2

SynonymsAbbr.Language
Spinal cord layer 1 T2SCL1T2Eng

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG0.5
Periaqueductal gray caudal partcontraPAGc1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray rostral partcontraPAGR0.5
Ventrolateral periaqueductal graycontraVLPAG0.5
Red nucleuscontraR-0.5
Inferior colliculuscontraICOL3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC3
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Reticular systemcontraRF0.5
Mesencephalic reticular formationcontraMRF3
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus dorsal partcontraLPBD-0.5
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL2
Parabrachial nucleus dorsolateral partcontraPBDL2
Parabrachial nucleus medialcontraPBnMe0.5
Parabrachial nucleus superior lateralcontraPBSL2
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD1
Medullary reticular nucleus dorsal partcontraMdDd1
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM3
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
HypothalamuscontraHYPO3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL1.5
Paracentral thalamic nucleuscontraPC1.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN1.5
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Medial thalamic zonecontraMTZ-0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Cervical segment 1contraCS10
Cervical segment 2contraCS20
Cervical segment 3contraCS30
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 7contraCS70
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Thoracal segment 3contraT30
Thoracal segment 5contraT50
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 11contraT110
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 4contraL40
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
MesencephalonipsiMEC3
Central grayipsiCG1
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray caudal partipsiPAGc3
Periaqueductal gray lateroventral partipsiPAGLV0.5
Periaqueductal gray rostral partipsiPAGR0.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Red nucleusipsiR-0.5
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Superior colliculus deep layersipsiSCd1.5
Edinger Westphal nucleusipsiEW-0.5
Reticular systemipsiRF0.5
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus lateral partipsiLRtL1
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Nucleus of the solitary tract caudal visceral sensory partipsiSolcacvs-0.5
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM0.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
HypothalamusipsiHYPO1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Lateral group of the dorsal thalamusipsiLAT0
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Medial thalamic zoneipsiMTZ0
Anterior pretectal nucleusipsiAPT-0.5
Posterior pretectal nucleusipsiPPT-0.5
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 3 C5ipsiSCL3C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Spinal cord layer 9 C5ipsiSCL9C5-0.5
Cervical segment 6ipsiCS61
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 3 C6ipsiSCL3C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Spinal cord layer 9 C6ipsiSCL9C6-0.5
Cervical segment 7ipsiCS71
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 3 C7ipsiSCL3C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS81
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 3 C8ipsiSCL3C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Spinal cord layer 9 C8ipsiSCL9C8-0.5
Thoracal segment 1ipsiT11
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Spinal cord layer 9 T1ipsiSCL9T1-0.5
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Spinal cord layer 9 T3ipsiSCL9T3-0.5
Thoracal segment 4ipsiT41
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Spinal cord layer 9 T4ipsiSCL9T4-0.5
Thoracal segment 5ipsiT51
Area X T5ipsiSCL10T5-0.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 6 T5ipsiSCL6T5-0.5
Spinal cord layer 3 T5ipsiSCL3T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 7 T5ipsiSCL7T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Spinal cord layer 9 T5ipsiSCL9T5-0.5
Thoracal segment 6ipsiT61
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Spinal cord layer 9 T6ipsiSCL9T6-0.5
Thoracal segment 7ipsiT71
Area X T7ipsiSCL10T7-0.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 6 T7ipsiSCL6T7-0.5
Spinal cord layer 3 T7ipsiSCL3T7-0.5
Spinal cord layer 4 T7ipsiSCL4T7-0.5
Spinal cord layer 7 T7ipsiSCL7T7-0.5
Spinal cord layer 8 T7ipsiSCL8T7-0.5
Spinal cord layer 9 T7ipsiSCL9T7-0.5
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
Median nerveipsimen3
Ulnar nerveipsiuln3
Tibial nerveipsitibial3
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Biceps femoris musclecontraMuscBF-0.5
Sublingual glandipsiOrgSubLGL0.5
Submandibular glandipsiOrgsSubg0.5
Biceps femoris muscleipsiMuscBF-0.5
Femoral bone marrowipsiOrgSkFemM-0.5
TestisipsiOrgTest1

Input from

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleuscontraPPTg3
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Caudal hypothalamuscontraHYPOC-0.5
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl-0.5
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular nucleus ventral posterior medial partipsiPaVePM3
Caudal hypothalamusipsiHYPOC-0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Lateral spinal nucleusipsiMESLn-0.5
Cervical segment 7ipsiCS70.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Cervical segment 8ipsiCS80.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Greater splanchnic nerveipsiAutoNGS1
Greater occipital nerveipsiPNSgo-0.5
Subcutaneous nipple region of the mammary gland M1contraOrgsMamM1-1
Subcutaneous nipple region of the mammary gland M2contraOrgsMamM2-1
Subcutaneous nipple region of the mammary gland M3contraOrgsMamM3-1
Subcutaneous nipple region of the mammary gland M1ipsiOrgsMamM13
Subcutaneous nipple region of the mammary gland M2ipsiOrgsMamM21
Subcutaneous nipple region of the mammary gland M3ipsiOrgsMamM31

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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