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Rat connectome



Auditory regions left


Abbreviation
AU
Color       
Superior regionsNeocortex

SynonymsAbbr.Language
 AUD 
Auditory regionsAUEng
Auditory cortical areas  
Dorsolateral cortex  
Auditory areaAuAng
Auditory cerebral cortex  
Temporoauditory cortex  
Auditory area  
Auditory areas  
Auditory cortex  
Dorsolateral neocortex Eng

SubregionsSide
Auditory regions layersleft
Primary auditory cortexleft
Dorsal auditory areasleft
Polyaudleft
Posterior auditory arealeft
Secondary auditory cortexleft
Surrounding amygdalopetal auditory belt corticesleft
Ventral auditory areasleft
Rostral part of the dorsolateral cortexleft
Dorsolateral anterior cortexleft
Auditory association cortexleft
Non primary auditory cortical beltleft

Output to

NameSideAbbr.WeightDetails
Dorsolateral pontine nucleusipsiDLPn-0.5
Inferior colliculusipsiICOL3
Central nucleus of the inferior colliculusipsiCIC3
External cortex of the inferior colliculusipsiECIC-0.5
External cortex of the inferior colliculus rostral partipsiECICr-0.5
Dorsal cortex of the inferior colliculusipsiDCIC-0.5
Dorsal cortex of the inferior colliculus layer 3ipsiDCICL3-0.5
Dorsal cortex of the inferior colliculus layer 1ipsiDCICL10.5
Dorsal cortex of the inferior colliculus layer 2ipsiDCICL21.5
Inferior colliculus lateral partipsiICOLL3
Inferior colliculus mediolateral middle partipsiICOLmLm4
Superior colliculusipsiSC1
Intermediate gray layer of the superior colliculusipsiInG0
Superior colliculus deep layersipsiSCd-0.5
Superior colliculus medial partipsimSC1
Middle cerebellar peduncleipsimcp-2
Superior cerebellar peduncleipsisucep0
Pontine grayipsiPG-0.5
Lateral zone of the middle ponsipsiMePGL-1
Pontine nuclei dorsolateral partipsiBPNdL-0.5
Ventrolateral prortion of the lateral pontine nucleiipsiVLBPNL-0.5
Medial portion of the ventral pontine nucleusipsiMpBPNv-0.5
Medial trapezoid nucleusipsiMTz1
Ventral nucleus of the trapezoid bodyipsiVNTB1
Cochlear nucleusipsiCON-0.5
Lateral superior oliveipsiLSO1
Superior paraolivary nucleusipsiSPO1
Lateral paragigantocellular nucleusipsiLPGi0.5
Basal nucleus MeynertipsiB1
Dorsal tenia tectaipsiDTT0
Tuberomammillary nucleusipsiTuM0.5
Posterior region [Lateral division of the hypothalamus]ipsiPReg0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Tuberal region of lateral hypothalamusipsiTuLH1
Dorsal thalamusipsiDOR-0.5
Ventral posterior thalamic complexipsiVPT-0.5
Posterior intralaminar thalamic nucleusipsiPIL3
Lateral posterior thalamic nucleusipsiLP-0.5
Perireticular thalamic nucleusipsiPRTN-0.5
Reticular thalamic nucleusipsiRt3
Subparafascicular thalamic nucleus medial partipsiSPFme1
Zona incertaipsiZI3
Nucleus of the fields of ForelipsiF0
Lateral most part of the dorsal zona incertaipsiZIDLm1
Zona incerta lateral partipsiZIL1
Zona incerta medial partipsiZIm0
Lateral most part of the ventral zona incertaipsiZIVLm1
Basolateral amygdaloid nucleusipsiBL-0.5
Anterior basolateral nucleusipsiBLA0
Posterior basolateral nucleusipsiBLP0
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP0
Lateral amygdaloid nucleusipsiLA1.5
Amygdalopiriform transition areaipsiAPir0
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo0
Nucleus of the lateral olfactory tractipsiLOT0
Posteromedial cortical nucleusipsiPMCo0
Amygdalostriatal transition areaipsiAStr-0.5
ClaustrumipsiCl1
Caudate putamenipsiCPu-0.5
Dorsomedial striatumipsiCPudm-0.5
Caudal striatumipsiCPuc-0.5
Dorsal striatumipsiCPud-0.5
Tail of the striatumipsiCPuTa-0.5
Subthalamic nucleusipsiSTh0
Cerebral cortexipsiCEC3
Dentate gyrusipsiDG0
Field CA1 of hippocampus dorsalipsiCA1d0
Field CA1 of hippocampus ventral partipsiCA1v0
Field CA2 of hippocampusipsiCA20
Field CA3 of hippocampusipsiCA30
Subiculum dorsal partipsiSd0
Subiculum ventral partipsiSv0
Indusium griseumipsiIG0
PresubiculumipsiPrS1
ParasubiculumipsiPaS0
PostsubiculumipsiPost2.5
Lateral entorhinal cortexipsiLEnt2
Medial entorhinal cortex dorsal partipsiMEntD1.5
Piriform cortexipsiPir0
Postpiriform transition areaipsiTR0
Retrosplenial dorsalipsiRSd1.5
Retrosplenial ventral partipsiRSPv0
Retrosplenial ventral aipsiRSv-a1
Retrosplenial area ventral part zone b/cipsiRSPv-bc0.5
Retrosplenial agranular cortexipsiRSA0
Anterior cingulate cortexipsiACC1
Dorsal anterior cingulate cortexipsiDACC2
Ventral anterior cingulate cortexipsiVACC0
Prelimbic cortexipsiPrL0
Infralimbic cortexipsiIL0
Parietal association cortexipsiPtA3
Lateral parietal association cortexipsiLPtA2
Medial parietal association cortexipsiMPtA1
Parietal cortex posterior areaipsiParP3
Parietal cortex posterior area dorsal partipsiParPD0
Temporal cortexipsiTE2.5
Temporal association cortex 1 mid rostral partipsiTeArM-0.5
Primary auditory cortexipsiAu13
Ventral auditory areasipsiAUDv2.5
Agranular insular cortex dorsal partipsiAID0
Agranular insular cortex dorsal part superficial layersipsiAIDsL1
Agranular insular cortex posterior partipsiAIP1
Agranular insular cortex ventral partipsiAIV0
Gustatory dysgranular insular cortexipsiDIg0
Granular insular cortexipsiGI0
Perirhinal cortexipsiA353
Perirhinal cortex upper partipsiPRhu-0.5
Ectorhinal cortexipsiA363
Motoric regionsipsiM0
Lateral agranular prefrontal cortexipsiAGl1.5
Medial agranular prefrontal cortexipsiAGm2
Medial agranular prefrontal cortex rostral partipsirAGm3
Primary somatosensory cortexipsiS11.5
Secondary somatosensory cortexipsiS22.5
Primary visual cortexipsiV12
Secondary visual cortex lateral areaipsiV2L2.5
Primary visual cortex binocular areaipsiV1B2
Intermediolateral cortical visual areaipsiVISli2.5
Laterolateral cortical visual areaipsiVISll2.5
Mediolateral cortical visual areaipsiVISlm2
Posterolateral cortical visual areaipsiVISpl2
Rostrolateral cortical visual areaipsiVISrl2
Anteromedial cortical visual areaipsiVISam2.5
Lateral orbital cortexipsiLO1
Ventral orbital cortexipsiVO0
Ventrolateral orbital areaipsiVLO-0.5
Dorsal geniculate nucleus lateral partipsiDLGl-0.5
Lateral geniculate complexipsiLG0
Medial geniculate nucleusipsiMG3
Medial geniculate nucleus dorsal partipsiMGD1
Medial geniculate nucleus medial partipsiMGM3
Medial geniculate nucleus ventral partipsiMGV3
Accessory olfactory bulbipsiAOB0
Olfactory bulb A16ipsiMOB0
Inferior colliculuscontraICOL3
Central nucleus of the inferior colliculuscontraCIC2
Dorsomedial to the central nucleus of the inferior colliculuscontraCICDM0
Dorsal cortex of the inferior colliculus layer 2contraDCICL20
Superior colliculuscontraSC0
Intermediate gray layer of the superior colliculuscontraInG0
Superior colliculus medial partcontramSC0
PonscontraP3
Lateral paragigantocellular nucleuscontraLPGi0.5
Basal nucleus MeynertcontraB0
Tuberomammillary nucleuscontraTuM0.5
Posterior region [Lateral division of the hypothalamus]contraPReg0.5
Tuberal region of lateral hypothalamuscontraTuLH0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Nucleus of the fields of ForelcontraF0
Anterior cingulate cortexcontraACC1
Parietal association cortexcontraPtA-0.5
Auditory regionscontraAU3
Auditory regions layer 1contraAUL13
Auditory regions layer 2contraAUL2-0.5
Auditory regions layer 3contraAUL3-0.5
Auditory regions layer 4contraAUL4-0.5
Auditory regions layer 5contraAUL5-0.5
Auditory regions layer 6contraAUL6-0.5
Medial agranular prefrontal cortexcontraAGm1
Primary visual cortexcontraV11
Lateral geniculate complexcontraLG0

Input from

NameSideAbbr.WeightDetails
Periaqueductal gray medial partipsiPAGm2
Ventrolateral periaqueductal grayipsiVLPAG2
Substantia nigra A9ipsiSN2
Substantia nigra reticular partipsiSNR-0.5
Ventral tegmental area A10ipsiVTA3
Dorsal tegmental nucleusipsiDTg3
Locus coeruleusipsiLC3
Parabrachial nucleusipsiPB3
Dorsal raphe nucleusipsiDR3
Medial raphe nucleusipsiMeR3
Basal nucleus MeynertipsiB2
Substantia innominataipsiSI2
Substantia innominata nucleus basalis complex caudal partipsiSiNBCC-0.5
HypothalamusipsiHYPO-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Caudal hypothalamusipsiHYPOC3
ThalamusipsiT-0.5
Gelatinosus thalamic nucleusipsiG-0.5
Paracentral thalamic nucleusipsiPC-0.5
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt-0.5
Subparafascicular thalamic nucleusipsiSPF0
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Ventral medial nucleus of the thalamusipsiVMT-0.5
Zona incertaipsiZI1
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC2
Basolateral amygdaloid nucleusipsiBL-0.5
Posterior basolateral nucleusipsiBLP0.5
Anterior basomedial nucleusipsiBMA0
Posterior basomedial nucleusipsiBMP0.5
Lateral amygdaloid nucleusipsiLA0.5
Dorsolateral part of the lateral nucleusipsiLaDL-0.5
Anterior cortical amygdaloid nucleusipsiACo0
Posterior amygdaloid nucleusipsiCOAp0
Posterolateral cortical nucleusipsiPLCo0
Posteromedial cortical nucleusipsiPMCo0
Basal gangliaipsiBG0
ClaustrumipsiCl0.5
Anterior part of the claustrumipsiACl2
Posterior part of the claustrumipsiClP3
Posterior third of the claustrumipsiClPt-0.5
Ventral part of claustrumipsiVCl3
Anterior part of the ventral claustrumipsiAVCl2
Central part of the ventral claustrumipsiCVCl2
Caudal globus pallidusipsiGPc2
Caudal globus pallidus adjacent to internal capsuleipsiGPcaic-0.5
Medial globus pallidusipsiMGP2
Rostral globus pallidusipsiGPr2
Ventral pallidumipsiVP0
Caudate putamenipsiCPu-0.5
Subthalamic nucleusipsiSTh-0.5
HippocampusipsiHIPP0
Field CA1 of hippocampus dorsalipsiCA1d0
Field CA1 of hippocampus ventral partipsiCA1v1.5
Field CA3 of hippocampusipsiCA30
Subiculum dorsal partipsiSd0
Subiculum ventral partipsiSv0
Indusium griseumipsiIG0
Lateral entorhinal cortexipsiLEnt1
Lateral entorhinal cortex layer 4ipsiLEntL42
Medial entorhinal cortex dorsal partipsiMEntD1
Piriform cortexipsiPir0
Postpiriform transition areaipsiTR0
Retrosplenial ventral partipsiRSPv0
Retrosplenial agranular cortexipsiRSA3
Ventral anterior cingulate cortexipsiVACC0
Prelimbic cortexipsiPrL0
Prelimbic cortex caudal partipsiPrLc-0.5
Prelimbic cortex rostral partipsiPrLr-0.5
Infralimbic cortexipsiIL0
Temporal cortexipsiTE2
Underlying white matter of the auditory cortexipsiAULW0
Primary auditory cortexipsiAu14
Secondary auditory cortexipsiAu2-0.5
Ventral auditory areasipsiAUDv4
Agranular insular cortex posterior partipsiAIP1
Granular insular cortexipsiGI0
Perirhinal cortexipsiA352
Ectorhinal cortexipsiA363
Motoric regionsipsiM-0.5
Lateral agranular prefrontal cortexipsiAGl0
Medial agranular prefrontal cortexipsiAGm0
Sensory regionsipsiSR-0.5
Primary somatosensory cortexipsiS11.5
Secondary somatosensory cortexipsiS24
Visual regionsipsiVR-0.5
Primary visual cortexipsiV10
Secondary visual cortex lateral areaipsiV2L3
Primary visual cortex binocular areaipsiV1B3
Laterolateral cortical visual areaipsiVISll1.5
Anteromedial cortical visual areaipsiVISam2
Medial orbital cortexipsiMO0
Ventral orbital cortexipsiVO1
Lateral geniculate complexipsiLG1
Medial geniculate nucleusipsiMG3
Medial geniculate nucleus dorsal partipsiMGD1
Medial geniculate nucleus medial partipsiMGM1
Medial geniculate nucleus lateral part of medial partipsiMGML-0.5
Medial geniculate nucleus ovoid part of the medial partipsiMGMO-0.5
Medial geniculate nucleus ventral partipsiMGV-0.5
Medial geniculate nucleus ventral part lateral partipsiMGVL-0.5
Medial geniculate nucleus ovoid part of the ventral partipsiMGVO-0.5
Olfactory bulb A16ipsiMOB0
Ventral tegmental area A10contraVTA3
Dorsal tegmental nucleuscontraDTg3
Locus coeruleuscontraLC3
Parabrachial nucleuscontraPB3
Dorsal raphe nucleuscontraDR3
Medial raphe nucleuscontraMeR3
Basal nucleus MeynertcontraB-0.5
HypothalamuscontraHYPO-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Caudal hypothalamuscontraHYPOC3
ThalamuscontraT-0.5
Zona incertacontraZI-0.5
Basolateral amygdaloid nucleuscontraBL-0.5
Dorsolateral part of the lateral nucleuscontraLaDL-0.5
ClaustrumcontraCl-0.5
Anterior part of the claustrumcontraACl1
Central part of claustrumcontraCeCl1
Dorsal part of claustrumcontraDCl1
Posterior part of the claustrumcontraClP1
Ventral part of claustrumcontraVCl2
Caudate putamencontraCPu-0.5
Entorhinal cortexcontraEnt0.5
Retrosplenial regions supragranular layerscontraRSsgL3
Retrosplenial agranular cortex infragranular layerscontraRSAigL1.5
Retrosplenial agranular cortex layer 6acontraRSAL6a3
Retrosplenial agranular cortex superficial layerscontraRSAsL3
Retrosplenial agranular cortex layer 2contraRSAL23
Frontal cortex area 1contraFr13
Frontal cortex area 1 layer 5bcontraFr1L5b3
Frontal cortex area 1 layer 6bcontraFr1L6b0
Frontal cortex area 1 layer 6acontraFr1L6a3
Frontal cortex area 1 layer 1contraFr1L10
Frontal cortex area 1 layer 2contraFr1L20
Frontal cortex area 1 layer 3contraFr1L33
Frontal cortex area 2contraFr23
Frontal cortex area 2 supragranular layerscontraFr2sgLa1.5
Frontal cortex area 2 layer 3contraFr2L33
Frontal cortex area 2 layer 1contraFr2L10
Frontal cortex area 2 layer 2contraFr2L20
Frontal cortex area 2 infragranular layerscontraFr2igLa3
Frontal cortex area 2 layer 5bcontraFr2L5b3
Frontal cortex area 2 layer 6bcontraFr2L6b0
Frontal cortex area 2 layer 6acontraFr2L6a3
Frontal cortex area 3 supragranular layerscontraFr3sgL1.5
Frontal cortex area 3 layer 3contraFr3L31.5
Frontal cortex area 3 infragranular layerscontraFr3igL3
Frontal cortex area 3 layer 5bcontraFr3L5b1.5
Frontal cortex area 3 layer 6acontraFr3L6a1.5
Parietal cortex area 1 supragranular layerscontraPar1sgL3
Parietal cortex area 1 layer 1contraPar1L10
Parietal cortex area 1 layer 2contraPar1L20
Parietal cortex area 1 infragranular layerscontraPar1igL1.5
Parietal cortex area 1 layer 6bcontraPar1L6b0
Parietal cortex area 1 layer 6acontraPar1L6a0.5
Parietal cortex area 1 medial partcontraPar1M1
Parietal cortex area 1 lateral partcontraPar1La2
Parietal cortex area 2contraPar22
Temporal association area 2contraTe23
Temporal association area 2 layer 1contraTe2L10
Temporal association area 2 layer 2contraTe2L20
Temporal association area 2 layer 3contraTe2L31.5
Temporal association area 2 layer 4contraTe2L41.5
Temporal association area 2 layer 5contraTe2L51.5
Temporal association area 2 layer 6contraTe2L61.5
Temporal association area 2 layer 6bcontraTe2L6b0
Temporal association area 3contraTe33
Temporal association area 3 layer 5contraTe3L51.5
Temporal association area 3 layer 6contraTe3L61.5
Temporal association area 3 layer 6bcontraTe3L6b0
Temporal association area 3 layer 1contraTe3L10
Temporal association area 3 layer 2contraTe3L20
Temporal association area 3 layer 3contraTe3L31.5
Temporal association area 3 layer 4contraTe3L41.5
Temporal association cortex 1contraTeA3
Temporal association cortex 1 layer 3contraTeAL31.5
Temporal association cortex 1 layer 4contraTeAL41.5
Temporal association cortex 1 layer 5contraTeAL51.5
Temporal association cortex 1 layer 6contraTeAL61.5
Temporal association cortex 1 layer 6bcontraTeAL6b0
Temporal association cortex 1 layer 1contraTeAL10
Temporal association cortex 1 layer 2contraTeAL20
Temporal cortex layer 2contraTELaL23
Temporal cortex layer 3contraTELaL33
Temporal cortex layer 4contraTELaL43
Temporal cortex layer 5contraTELaL51
Temporal cortex upper half of layer 6contraTELaL6uh1.5
Auditory regionscontraAU3
Auditory regions layer 1contraAUL10
Infragranular layers of the auditory cortexcontraAULi3
Supragranular layers of the auditory cortexcontraAULs3
Primary auditory cortexcontraAu1-0.5
Primary auditory cortex layer 3contraAu1L33
Primary auditory cortex layer 5contraAu1L53
Secondary auditory cortexcontraAu2-0.5
Dysgranular insular cortex layer 6acontraDIL6a1
Perirhinal cortexcontraA350.5
Intermediate region of the primary somatosensory cortex forelimb regioncontraS1FLim1
Primary somatosensory cortex hindlimb region lateral partcontraS1HLL1
Primary somatosensory cortex hindlimb region layer 1contraS1HL10
Primary somatosensory cortex hindlimb region layer 2contraS1HL20
Primary somatosensory cortex hindlimb region layer 3contraS1HL31.5
Primary somatosensory cortex hindlimb region layer 5bcontraS1HL5b1.5
Primary somatosensory cortex hindlimb region layer 6acontraS1HL6a1.5
Primary somatosensory cortex hindlimb region layer 6bcontraS1HL6b0
Rostral two-thirds of the cerebral cortex layer 5bcontraPFCrttL5b3
Primary visual cortexcontraV11
Primary visual cortex lateral partcontraV1La0.5
Secondary visual cortex medial areacontraV2M2
Secondary visual cortex medial area layer 4contraV2ML41.5
Secondary visual cortex medial area layer 3contraV2ML31.5
Secondary visual cortex medial area layer 1contraV2ML10
Secondary visual cortex medial area layer 2contraV2ML20
Secondary visual cortex medial area upper part of layer 5contraV2MuL51.5
Secondary visual cortex medial area layer 6bcontraV2ML6b0
Secondary visual cortex medial area layer 6acontraV2ML6a1.5
Medial part of secondary visual cortex lateral areacontraV2LM1
Secondary visual cortex lateral area layer 1contraV2LL10
Secondary visual cortex lateral area layer 2contraV2LL20
Secondary visual cortex lateral area layer 6bcontraV2LL6b0
Primary visual cortex binocular area layer 3contraV1BL32
Primary visual cortex binocular area layer 4contraV1BL41.5
Primary visual cortex binocular area upper part of layer 4contraV1BuL40
Primary visual cortex binocular area layer 5acontraV1BL5a1.5
Primary visual cortex binocular area layer 5bcontraV1BL5b0
Primary visual cortex binocular area upper part of layer 6acontraV1BuL6a1.5
Primary visual cortex monocular area layer 3contraV1ML31
Primary visual cortex monocular area layer 4contraV1ML41
Primary visual cortex monocular area layer 5acontraV1ML5a1
Primary visual cortex monocular area layer 6contraV1ML61
Primary visual cortex monocular area layer 6acontraV1ML6a1
Primary visual cortex monocular area medial partcontraV1MM1
Caudal one-third of the cerebral cortex layer 6acontraCauotCxL6a3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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