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Rat connectome



Spinal cord layer 1 C1 left


Abbreviation
SCL1C1
Color       
Superior regionsSuperficial dorsal horn C1

SynonymsAbbr.Language
Spinal cord layer 1 C1SCL1C1Eng
Rexed lamina 1 C1  
Rexed lamina I C1  
Marginal zone C1  

SubregionsSide
Most ventrolateral spinal cord layer 1 C1left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG1
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG3
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray caudal partipsiPAGc3
Periaqueductal gray lateroventral partipsiPAGLV0.5
Periaqueductal gray rostral partipsiPAGR0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR-0.5
Prerubral fieldipsiPR-3
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Superior colliculus deep layersipsiSCd1.5
Edinger Westphal nucleusipsiEW-0.5
Reticular systemipsiRF0.5
Isthmic reticular formationipsiisRT-0.5
Mesencephalic reticular formationipsiMRF1
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus external partipsiLPBE1.5
Lateral parabrachial nucleus lateral partipsiLPBL3
Parabrachial nucleus central lateral partipsiPBCeL3
Parabrachial nucleus dorsolateral partipsiPBDL3
Parabrachial nucleus external divison lateral partipsiPBeDL3
Parabrachial nucleus external divison medial partipsiPBeDM3
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL3
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Principal sensory trigeminal nucleusipsiPr5-2
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu3
Cuneate nucleus rostral partipsiCuRo-0.5
External cuneate nucleusipsiECu-0.5
Tuberomammillary nucleusipsiTuM2
HypothalamusipsiHYPO1
Dorsomedial hypothalamic nucleusipsiDMHy2
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Anterior hypothalamic areaipsiAHA2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleusipsiPa2
Periventricular hypothalamic nucleusipsiPe2
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO2
Mammillary bodyipsiCMAM2
ThalamusipsiT0.5
Anteromedial thalamic nucleusipsiAM-3
Anteroventral thalamic nucleusipsiAV-0.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Rhomboid thalamic nucleusipsiRh-3
Lateral group of the dorsal thalamusipsiLAT0
Lateral anterior nucleus of the dorsal thalamusipsiLAAT-0.5
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group triangular partipsiPoT0.5
Mediodorsal thalamic nucleusipsiMD-0.5
Submedius thalamic nucleusipsiSub0.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventral anterior-lateral complex of the thalamusipsiVAL-0.5
Ventrolateral thalamic nucleusipsiVL-0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Ventromedial thalamic nucleusipsiVM-0.5
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Medial thalamic zoneipsiMTZ0
Posterior groupipsiPTG0.5
Ventral medial nucleus of the thalamusipsiVMT-3
Anterior pretectal nucleusipsiAPT-0.5
Posterior pretectal nucleusipsiPPT-0.5
Central amygdaloid nucleusipsiCe1
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Spinal cord layers C1ipsiSCLC1-2
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Spinal cord layers T2ipsiSCLT23
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Intermediomedial cell column L1ipsiIMML12
Lumbar segment 2ipsiL21
Intermediomedial cell column L2ipsiIMML22
Lumbar segment 3ipsiL31
Intermediomedial cell column L3ipsiIMML32
Lumbar segment 4ipsiL41
Intermediomedial cell column L4ipsiIMML42
Lumbar segment 5ipsiL51
Intermediomedial cell column L5ipsiIMML52
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL61
Intermediomedial cell column L6ipsiIMML62
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG2
Periaqueductal gray caudal partcontraPAGc3
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray rostral partcontraPAGR0.5
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Inferior colliculuscontraICOL3
Central nucleus of the inferior colliculuscontraCIC3
External cortex of the inferior colliculuscontraECIC1
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC3
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG2
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Reticular systemcontraRF0.5
Mesencephalic reticular formationcontraMRF3
Deep mesencephalic nucleuscontraDpMe2
Deep mesencephalic nucleus intermediatecontraDpMei2
Deep mesencephalic nucleus lateral partcontraDpMeL2
Deep mesencephalic nucleus medial partcontraDpMeM2
Pontine reticular nucleus caudal partcontraPNC1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF1
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL2.5
Parabrachial nucleus central lateral partcontraPBCeL3
Parabrachial nucleus dorsolateral partcontraPBDL3
Parabrachial nucleus external divison lateral partcontraPBeDL3
Ventral part of the parabrachial nucleus external divison lateral partcontraVPBeDL-0.5
Parabrachial nucleus external divison medial partcontraPBeDM3
Parabrachial nucleus medialcontraPBnMe2
Parabrachial nucleus superior lateralcontraPBSL3
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleus dorsal partcontraMdDd1
Subcoeruleus nucleuscontraSubC1
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
Tuberomammillary nucleuscontraTuM2
HypothalamuscontraHYPO3
Dorsomedial hypothalamic nucleuscontraDMHy2
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Anterior hypothalamic areacontraAHA2
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Posterior hypothalamic areacontraPHA2
Ventromedial hypothalamic nucleuscontraVMH2
Arcuate nucleuscontraArc2
Paraventricular hypothalamic nucleuscontraPa3
Periventricular hypothalamic nucleuscontraPe2
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
Mammillary bodycontraCMAM2
ThalamuscontraT3
Anteroventral thalamic nucleuscontraAV-0.5
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL1.5
Paracentral thalamic nucleuscontraPC1.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Lateral anterior nucleus of the dorsal thalamuscontraLAAT-0.5
Posterior thalamic nuclear groupcontraPo3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Suprageniculate thalamic nucleuscontraSG2
Mediodorsal thalamic nucleuscontraMD-0.5
Submedius thalamic nucleuscontraSub0.5
Ventral anterior-lateral complex of the thalamuscontraVAL-0.5
Ventrolateral thalamic nucleuscontraVL-0.5
Ventral posterior thalamic complexcontraVPT3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventromedial thalamic nucleuscontraVM-0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN1.5
Posterior intralaminar thalamic nucleuscontraPIL2
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Medial thalamic zonecontraMTZ-0.5
Posterior groupcontraPTG0.5
Triangular portion of the posterior nuclear groupcontraPTGtri-0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT1
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS10
Cervical segment 2contraCS20
Cervical segment 3contraCS30
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 7contraCS7-1
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Nodose ganglionipsiAutoNoG-0.5
Biceps femoris muscleipsiMuscBF-0.5
Biceps femoris musclecontraMuscBF-0.5

Input from

NameSideAbbr.WeightDetails
Middle meningeal arteryipsimime-0.5
Adventitia of the middle meningeal arteryipsimimea-0.5
Superficial temporal arteryipsista2
Superior dura sinusipsisds-0.5
Adventitia of the superior dura sinusipsiasds0
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Subnucleus reticularis dorsalis dorsal partipsiSRDD-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Trigeminal subnucleus caudalisipsi5SSC0
Trigeminal ganglionipsi5Gn3
Mandibular region of the trigeminal ganglionipsi5GnMa0.5
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm3
Maxillary region of the trigeminal ganglionipsi5GnV2-0.5
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM3
Ophthalmic region of the trigeminal ganglionipsi5GnOP1
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM3
Superficial part of the trigeminal ganglionipsi5GnS3
Medial vestibular nucleus caudal partipsiMVeP1
Raphe magnus nucleusipsiRMg-0.5
Cuneate nucleusipsiCu-0.5
External cuneate nucleusipsiECu-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular nucleus ventral posterior medial partipsiPaVePM3
Caudal hypothalamusipsiHYPOC-0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C2ipsiDRGC21
Dorsal root ganglion C3ipsiDRGC30.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Adventitia of the superior dura sinuscontraasds0
Pedunculopontine tegmental nucleuscontraPPTg1
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Cuneiforme nucleuscontraCnF-2
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Medial vestibular nucleus caudal partcontraMVeP1
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Caudal hypothalamuscontraHYPOC-0.5
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl-0.5
Primary somatosensory cortexcontraS10.5
Primary somatosensory cortex barrel fieldcontraS1BF1
Dorsal horn C1contraDHC1-0.5
C1 C2 anastomosis suboccipital nerve dorsal spinal nerve C2ipsic1c2a-0.5
Cutaneous branch of the mylohyoid nerveipsicmyhy3
Frontal nerveipsiFroN3
Greater occipital nerveipsiPNSgo1
Inferior alveolar nerveipsiialv-0.5
Auriculotemporal nerveipsi5V3Aute-0.5
Median nerveipsimen3
Mental nerveipsiment-0.5
Mylohyoid nerveipsimyhy3
Palatine nerveipsipala-0.5
Sternomastoid nerveipsismn1
Zygomaticofacial nerveipsizfn4
Mental nervecontrament-0.5
Inferior alveolar nervecontraialv-0.5
CorneaipsiOrgsCorn2
EyelidipsiOrgsEL-0.5
Intervibrissal furipsiiVFu-0.5
Vibrissal follicle complex A1ipsiVFCA10
Vibrissal follicle complex A4ipsiVFCA4-2
Splenius capitis muscleipsiMuscSpCa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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