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Rat connectome



Spinal cord layer 1 C3 left


Abbreviation
SCL1C3
Color       
Superior regionsSuperficial dorsal horn C3

SynonymsAbbr.Language
Spinal cord layer 1 C3SCL1C3Eng

SubregionsSide
Mediolateral extent of the spinal cord layer 1 C3left
Most ventrolateral spinal cord layer 1 C3left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG1
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray caudal partipsiPAGc3
Periaqueductal gray lateroventral partipsiPAGLV0.5
Periaqueductal gray rostral partipsiPAGR0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Red nucleusipsiR-0.5
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Superior colliculus deep layersipsiSCd1.5
Edinger Westphal nucleusipsiEW-0.5
Reticular systemipsiRF0.5
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus external partipsiLPBE1.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL2
Parabrachial nucleus dorsolateral partipsiPBDL2
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL2
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
Cuneate nucleus rostral partipsiCuRo-0.5
External cuneate nucleusipsiECu-0.5
HypothalamusipsiHYPO1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Posterior thalamic nuclear groupipsiPo0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Posterior groupipsiPTG0.5
Anterior pretectal nucleusipsiAPT-0.5
Posterior pretectal nucleusipsiPPT-0.5
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS21
Interneuron groups of layer 9 C2ipsiiGL9C2-0.5
Motoneuron groups of layer 9 C2ipsiMGL9C2-0.5
Cervical segment 3ipsiCS31
Interneuron groups of layer 9 C3ipsiiGL9C3-0.5
Motoneuron groups of layer 9 C3ipsiMGL9C3-0.5
Cervical segment 4ipsiCS41
Interneuron groups of layer 9 C4ipsiiGL9C4-0.5
Motoneuron groups of layer 9 C4ipsiMGL9C4-0.5
Cervical segment 5ipsiCS51
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT23
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray caudal partcontraPAGc1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray rostral partcontraPAGR0.5
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Inferior colliculuscontraICOL3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC3
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Anterior interposed nucleus medial partcontraAINM1
Anterior interposed nucleus rostral partcontraAINR1
Posterior interposed nucleus caudodorsal partcontraCERpinCD-0.5
Posterior interposed nucleus medial partcontraCERmpin1
Posterior interposed nucleus ventral partcontraCERpinV-0.5
Dorsolateral protuberancecontraDLPr1
Reticular systemcontraRF0.5
Mesencephalic reticular formationcontraMRF3
Deep mesencephalic nucleuscontraDpMe1
Deep mesencephalic nucleus intermediatecontraDpMei2
Deep mesencephalic nucleus lateral partcontraDpMeL2
Deep mesencephalic nucleus medial partcontraDpMeM2
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Ventral part of the parabrachial nucleus external divison lateral partcontraVPBeDL-0.5
Parabrachial nucleus medialcontraPBnMe0.5
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleus dorsal partcontraMdDd1
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
HypothalamuscontraHYPO3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL1.5
Paracentral thalamic nucleuscontraPC1.5
Posterior thalamic nuclear groupcontraPo1
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventral posterior thalamic complexcontraVPT3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN1.5
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Posterior groupcontraPTG0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS10
Cervical segment 2contraCS20
Cervical segment 3contraCS30
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 7contraCS7-1
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Biceps femoris muscleipsiMuscBF-0.5
Biceps femoris musclecontraMuscBF-0.5

Input from

NameSideAbbr.WeightDetails
Adventitia of the middle meningeal arteryipsimimea-0.5
Superficial temporal arteryipsista2
Adventitia of the superior dura sinusipsiasds0
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Subnucleus reticularis dorsalis dorsal partipsiSRDD-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Boetzinger complexipsiBo0
Mandibular region of the trigeminal ganglionipsi5GnMa0.5
Maxillary region of the trigeminal ganglionipsi5GnV20.5
Ophthalmic region of the trigeminal ganglionipsi5GnV10.5
Ophthalmic region of the trigeminal ganglionipsi5GnOP2
Medial vestibular nucleus caudal partipsiMVeP1
Raphe magnus nucleusipsiRMg-0.5
Cuneate nucleusipsiCu-0.5
External cuneate nucleusipsiECu-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular nucleus ventral posterior medial partipsiPaVePM3
Caudal hypothalamusipsiHYPOC-0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C3ipsiDRGC33
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Dorsal root ganglion C6ipsiDRGC6-0.5
Adventitia of the superior dura sinuscontraasds0
Pedunculopontine tegmental nucleuscontraPPTg1
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Cuneiforme nucleuscontraCnF-2
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Medial vestibular nucleus caudal partcontraMVeP1
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Caudal hypothalamuscontraHYPOC-0.5
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl-0.5
Primary somatosensory cortexcontraS10.5
Primary somatosensory cortex barrel fieldcontraS1BF1
Dorsal horn C1contraDHC1-0.5
Dorsal root ganglion C3contraDRGC31
C1 C2 anastomosis suboccipital nerve dorsal spinal nerve C2ipsic1c2a-0.5
Frontal nerveipsiFroN3
Greater occipital nerveipsiPNSgo-0.5
Inferior alveolar nerveipsiialv-0.5
Auriculotemporal nerveipsi5V3Aute-0.5
Median nerveipsimen3
Mental nerveipsiment-0.5
Mylohyoid nerveipsimyhy-0.5
Phrenic nerveipsiphren-0.5
Sternomastoid nerveipsismn1
Zygomaticofacial nerveipsizfn4
Mental nervecontrament-0.5
Inferior alveolar nervecontraialv-0.5
CorneaipsiOrgsCorn2
Splenius capitis muscleipsiMuscSpCa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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