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Rat connectome



Spinal cord layer 1 S3 right


Abbreviation
SCL1S3
Color       
Superior regionsSuperficial dorsal horn S3

SynonymsAbbr.Language
Spinal cord layer 1 S3SCL1S3Eng

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Dorsal periaqueductal graycontraDPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray caudal partcontraPAGc1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG1
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Reticular systemcontraRF1
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB-0.5
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus medialcontraPBnMe0.5
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt1
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD-0.5
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Nucleus of the solitary tractcontraSol1
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM3
Cuneate nucleuscontraCu3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL1.5
Paracentral thalamic nucleuscontraPC1.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventrolateral thalamic nucleuscontraVL3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN1.5
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Medial thalamic zonecontraMTZ-0.5
Posterior groupcontraPTG3
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Spinothalamic tractcontrastt-2
Accumbens nucleuscontraAc3
Cervical segment 1contraCS10
Ventral horn C1contraVHC11
Cervical segment 2contraCS20
Ventral horn C2contraVHC21
Cervical segment 3contraCS30
Ventral horn C3contraVHC31
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 7contraCS70
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 5contraT50
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 11contraT110
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 3contraSa30
Sacral segment 4contraSa40
MesencephalonipsiMEC3
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal grayipsiDPAG1
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray caudal partipsiPAGc3
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Red nucleusipsiR-0.5
Intercollicular nucleusipsiInCo-0.5
Superior colliculus deep layersipsiSCd1.5
Edinger Westphal nucleusipsiEW-0.5
Reticular systemipsiRF0.5
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL0
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus lateral partipsiLRtL1
Subnucleus reticularis dorsalisipsiSRD1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract lateral partipsiSolL2
Nucleus of the solitary tract medial partipsiSolM2
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM0.5
Rostral ventrolateral medullaipsiRVLM-0.5
Cuneate nucleusipsiCu1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Lateral group of the dorsal thalamusipsiLAT0
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventrolateral thalamic nucleusipsiVL1
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Medial thalamic zoneipsiMTZ0
Posterior groupipsiPTG1
Anterior pretectal nucleusipsiAPT-0.5
Posterior pretectal nucleusipsiPPT-0.5
Accumbens nucleusipsiAc1
Cervical segment 1ipsiCS11
Ventral horn C1ipsiVHC10.5
Cervical segment 2ipsiCS21
Ventral horn C2ipsiVHC20.5
Cervical segment 3ipsiCS31
Ventral horn C3ipsiVHC30.5
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa31
Interneuron groups of layer 9 S3ipsiiGL9S3-0.5
Motoneuron groups of layer 9 S3ipsiMGL9S3-0.5
Sacral segment 4ipsiSa41
Interneuron groups of layer 9 S4ipsiiGL9S4-0.5
Motoneuron groups of layer 9 S4ipsiMGL9S4-0.5
StomachipsiOrgsStomS-1
Biceps femoris musclecontraMuscBF-0.5
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10
Biceps femoris muscleipsiMuscBF-0.5
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10

Input from

NameSideAbbr.WeightDetails
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC0.5
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Caudal hypothalamuscontraHYPOC-0.5
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Central grayipsiCG1
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm0
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular nucleus ventral posterior medial partipsiPaVePM3
Caudal hypothalamusipsiHYPOC-0.5
Zona incerta rostromedial partipsiZIrm0
Dorsal root ganglion L4ipsiDRGL4-0.5
Sciatic nerveipsisci-0.5
Ventrolateral tail nerveipsivLatn-0.5
Urinary bladdercontraOrgUrBLa-0.5
Tail skinipsiOrgBSTail-0.5
Urinary bladderipsiOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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