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Rat connectome



Spinal cord layer 1 C5 right


Abbreviation
SCL1C5
Color       
Superior regionsSuperficial dorsal horn C5

SynonymsAbbr.Language
Spinal cord layer 1 C5SCL1C5Eng

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC1
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray caudal partcontraPAGc1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray rostral partcontraPAGR0.5
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Inferior colliculuscontraICOL3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC3
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Cerebellar lobule 4contraCERL40
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Reticular systemcontraRF0.5
Mesencephalic reticular formationcontraMRF3
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus medialcontraPBnMe0.5
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Ventral lateral medulla oblongatacontraMVL-2
Caudal ventrolateral medullacontraCVLM3
Caudal ventrolateral medulla lateral partcontraCVLMl2
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
HypothalamuscontraHYPO3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL1.5
Paracentral thalamic nucleuscontraPC1.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Posterior thalamic nuclear groupcontraPo1
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Submedius thalamic nucleuscontraSub0.5
Ventral posterior thalamic complexcontraVPT3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN1.5
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Posterior groupcontraPTG0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS10
Cervical segment 2contraCS20
Cervical segment 3contraCS30
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 7contraCS7-1
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT30
Thoracal segment 5contraT50
Thoracal segment 6contraT60
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 12contraT120
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 5contraL50
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
MesencephalonipsiMEC3
Central grayipsiCG1
Nucleus of DarkschewitschipsiDk-0.5
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray caudal partipsiPAGc3
Periaqueductal gray lateroventral partipsiPAGLV0.5
Periaqueductal gray rostral partipsiPAGR0.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Red nucleusipsiR-0.5
Prerubral fieldipsiPR-3
Inferior colliculusipsiICOL1
Intercollicular nucleusipsiInCo-0.5
Superior colliculusipsiSC1
Superior colliculus deep layersipsiSCd1.5
Edinger Westphal nucleusipsiEW-0.5
Cerebellar lobule 4ipsiCERL40
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Reticular systemipsiRF0.5
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF1
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus external partipsiLPBE1.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL2
Parabrachial nucleus dorsolateral partipsiPBDL2
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL2
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Spinal trigeminal nucleus caudal partipsiSp5C1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Caudal ventrolateral medulla lateral partipsiCVLMl3
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu3
Cuneate nucleus rostral partipsiCuRo-0.5
External cuneate nucleusipsiECu-0.5
HypothalamusipsiHYPO1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Anteromedial thalamic nucleusipsiAM-3
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Rhomboid thalamic nucleusipsiRh-3
Posterior thalamic nuclear groupipsiPo0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Submedius thalamic nucleusipsiSub0.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL-0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Ventromedial thalamic nucleusipsiVM-3
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Posterior groupipsiPTG0.5
Ventral medial nucleus of the thalamusipsiVMT-3
Anterior pretectal nucleusipsiAPT-0.5
Posterior pretectal nucleusipsiPPT-0.5
Cuneate fasciculusipsicu-2
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Interneuron groups of layer 9 C3ipsiiGL9C3-0.5
Motoneuron groups of layer 9 C3ipsiMGL9C3-0.5
Cervical segment 4ipsiCS41
Interneuron groups of layer 9 C4ipsiiGL9C4-0.5
Motoneuron groups of layer 9 C4ipsiMGL9C4-0.5
Cervical segment 5ipsiCS51
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Cervical segment 6ipsiCS61
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C6ipsiMGL9C6-0.5
Cervical segment 7ipsiCS71
Interneuron groups of layer 9 C6ipsiiGL9C6-0.5
Motoneuron groups of layer 9 C7ipsiMGL9C7-0.5
Cervical segment 8ipsiCS81
Interneuron groups of layer 9 C7ipsiiGL9C7-0.5
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT23
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
Biceps femoris musclecontraMuscBF-0.5
Biceps femoris muscleipsiMuscBF-0.5

Input from

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleuscontraPPTg1
A4 noradrenaline cellscontraA40
A5 noradrenaline cellscontraA53
A7 noradrenaline cellscontraA73
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Caudal ventromedial ponscontraCVeMePn-0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Rostroventrolateral reticular nucleuscontraRVL-0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Medullary reticular nucleus dorsal partcontraMdDd3
Dorsal part of the medullary reticular nucleus dorsal partcontradMdDd1
Ventral part of the medullary reticular nucleus dorsal partcontravMdDd3
Medullary reticular nucleus ventral partcontraMdV3
Subcoeruleus nucleuscontraSubC1
C1 adrenaline cellscontraC11
C2 adrenaline cellscontraC21
Spinal trigeminal nucleus caudal partcontraSp5C0
Vestibular nucleicontraVnc1.5
Medial vestibular nucleus caudal partcontraMVeP1
Nucleus of the solitary tractcontraSol2
Nucleus of the solitary tract commissural partcontraSolC-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Caudal ventrolateral medulla lateral partcontraCVLMl2
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA21
Cuneate nucleuscontraCu0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Posteroventromedial medulla oblongatacontraMeObpvm-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm4
HypothalamuscontraHYPO-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic nucleuscontraPH-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Caudal hypothalamuscontraHYPOC-0.5
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl-0.5
Lateral agranular prefrontal cortex layer 5contraAGlL5-0.5
Medial agranular prefrontal cortex rostral partcontrarAGm-0.5
Medial agranular prefrontal cortex rostral part layer 5contrarAGmL5-0.5
Primary somatosensory cortexcontraS10.5
Primary somatosensory cortex barrel fieldcontraS1BF1
Primary somatosensory cortex layer 5contraS1L5-0.5
Secondary somatosensory cortexcontraS2-0.5
Secondary somatosensory cortex layer 5contraS2L5-0.5
Central grayipsiCG1
Red nucleusipsiR2.5
Red nucleus caudal partipsiRnCa3
Red nucleus rostral partipsiRnRo3
Ventrolateral tegmental areaipsiVLTg2
Pedunculopontine tegmental nucleusipsiPPTg1
Interstitial nucleus of CajalipsiInC1
A4 noradrenaline cellsipsiA40
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Caudal ventromedial ponsipsiCVeMePn-0.5
Magnocellular reticular nucleusipsiNRMC-0.5
Rostroventrolateral reticular nucleusipsiRVL1
Ventral reticular formationipsiVRF2
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Subnucleus reticularis dorsalis dorsal partipsiSRDD-0.5
Medullary reticular nucleus dorsal partipsiMdDd4
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd4
Ventral part of the medullary reticular nucleus dorsal partipsivMdDd4
Medullary reticular nucleus ventral partipsiMdV4
Subcoeruleus nucleusipsiSubC3
C1 adrenaline cellsipsiC11
C2 adrenaline cellsipsiC21
Boetzinger complexipsiBo0
Spinal trigeminal nucleus caudal partipsiSp5C2
Trigeminal ganglionipsi5Gn2
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm2
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM2
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM2
Superficial part of the trigeminal ganglionipsi5GnS2
Vestibular nucleiipsiVnc1.5
Medial vestibular nucleus caudal partipsiMVeP1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract commissural partipsiSolC1
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Lateral part of the caudal ventrolateral medullaipsiLCVLM1
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Cuneate nucleusipsiCu1
External cuneate nucleusipsiECu-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Posteroventromedial medulla oblongataipsiMeObpvm-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus lateral parvocellular partipsiPaLp3
Paraventricular nucleus ventral posterior medial partipsiPaVePM3
Caudal hypothalamusipsiHYPOC-0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C5ipsiDRGC53
Dorsal root ganglion C6ipsiDRGC6-0.5
Cervical segment 7ipsiCS70.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Cervical segment 8ipsiCS80.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Inferior alveolar nervecontraialv-0.5
Mental nervecontrament-0.5
Greater occipital nerveipsiPNSgo-0.5
Auriculotemporal nerveipsi5V3Aute-0.5
Median nerveipsimen3
Mylohyoid nerveipsimyhy-0.5
Phrenic nerveipsiphren-0.5
Superficial cutaneous part of the radial nerveipsiradsc2
Mental nerveipsiment-0.5
Inferior alveolar nerveipsiialv-0.5
Subcutaneous nipple region of the mammary gland M1contraOrgsMamM1-1
Subcutaneous nipple region of the mammary gland M1ipsiOrgsMamM11

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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