University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Parafascicular nucleus left


Abbreviation
PFa
Color       
Superior regionsIntralaminar nuclei

SynonymsAbbr.Language
Parafascicular nucleusPFaEng

SubregionsSide
Parafascicular nucleus dorsolateral partleft
Parafascicular nucleus caudomedial partleft
Parafascicular nucleus posterior partleft
Parafascicular nucleus ventral partleft
Parafascicular nucleus medial partleft

Output to

NameSideAbbr.WeightDetails
Ventral tegmental nucleusipsiVTg0
Middle cerebellar peduncleipsimcp0
Superior cerebellar peduncleipsisucep-2
Mesencephalic reticular formationipsiMRF2
Medial preoptic areaipsiMPA0
Periventricular zoneipsiPVZ0
Suprachiasmatic nucleusipsiSCh0
Zona incertaipsiZI3
Zona incerta dorsal partipsiZID3
Basolateral amygdaloid nucleusipsiBL0.5
Central amygdaloid nucleusipsiCe-0.5
Caudate putamenipsiCPu-0.5
Caudal striatumipsiCPuc-0.5
Ventral region of the caudal striatumipsiCPuVc1
Central striatumipsiCPuce-0.5
Rostral striatumipsiCPur-0.5
Agranular insular cortex anterior part layer 4ipsiAIAL43
Agranular insular cortex dorsal part layer 3ipsiAIDL33
Agranular insular cortex dorsal part superficial layersipsiAIDsL2
Dysgranular insular cortexipsiDI2
Granular insular cortexipsiGI2
Granular insular cortex layer 4ipsiGIL4-0.5
Granular insular cortex layer 3ipsiGIL3-0.5
Granular insular cortex layer 1ipsiGIL1-0.5
Lateral agranular prefrontal cortexipsiAGl1
Lateral agranular prefrontal cortex layer 1ipsiAGlL1-0.5
Lateral agranular prefrontal cortex layer 3ipsiAGlL3-0.5
Lateral agranular prefrontal cortex layer 4ipsiAGlL4-0.5
Medial agranular prefrontal cortexipsiAGm1
Somatosensory cortex layer 1ipsiSRL1-0.5
Somatosensory cortex layer 3ipsiSRL3-0.5
Somatosensory cortex layer 4ipsiSRL4-0.5
Anterior medial frontal cortexipsiAMFC0.5
Lateral orbital cortexipsiLO2
Ventral orbital cortexipsiVO1
Ventrolateral orbital area posterior partipsiVLOp0.5
Ventral lateral geniculate nucleus magnocellular partipsiVLGMC0
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC3
Ventral tegmental nucleuscontraVTg0

Input from

NameSideAbbr.WeightDetails
Periaqueductal gray rostral dorsal partipsiPAGdr1
Periaqueductal gray caudal dorsolateral partipsiPAGLDC-0.5
Periaqueductal gray rostrolateral partipsiPAGRL1
Periaqueductal gray rostrocaudal extentipsiPAGroe1
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray caudal partipsiPAGvlc-0.5
Superior colliculusipsiSC3
Superior colliculus deep layersipsiSCd1
Pedunculopontine tegmental nucleusipsiPPTg3
Locus coeruleusipsiLC-0.5
Mesencephalic reticular formationipsiMRF3
Cuneiforme nucleusipsiCnF-0.5
Supratrigeminal nucleusipsiSu5-0.5
Vestibular nucleiipsiVnc-1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Reticular thalamic nucleusipsiRt3
Zona incertaipsiZI-0.5
Zona incerta dorsal partipsiZID3
Pretectal regionipsiPRT2
Anterior pretectal nucleusipsiAPT2
Posterior pretectal nucleusipsiPPT2
Medial globus pallidusipsiMGP-0.5
Caudate putamenipsiCPu-0.5
Superior colliculuscontraSC-0.5
Pedunculopontine tegmental nucleuscontraPPTg2.5
Cerebellar nucleicontraDCeN-0.5
Lateral cerebellar nucleuscontraCERL-0.5
Parabrachial nucleus external divison medial partcontraPBeDM-0.5
Parabrachial nucleus medialcontraPBnMe-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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