University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Cerebellar nuclei right


Abbreviation
DCeN
Color       
Superior regionsCerebellum

SynonymsAbbr.Language
Cerebellar nucleiDCeNEng
Cerebellar nuclear complex Eng
Intracerebellar nuclei Eng

SubregionsSide
Caudoventral aspect of the cerebellar nucleiright
Central cerbellar nucleiright
Deep cerebellar nucleiright
Infracerebellar nucleus of Gacekright
Interstitial cell groupsright
Between nucleus medialis and interposed nucleusright
Junction between the lateral vestibular nucleus and the anterior interposed nucleusright
Cerebellar nucleus cellright

Output to

NameSideAbbr.WeightDetails
Ventral tegmental area A10contraVTA1
Lateral tegmental nucleuscontraLTN1
Pontine nucleicontraPn-0.5
Raphe pallidus nucleuscontraRPa4
Inferior olivecontraIO3
Inferior olive caudal partcontraIOCa2
Inferior olive dorsal nucleuscontraIOD3
Inferior olive medial nucleuscontraIOM3
Inferior olive posterior partcontraIOpo2
Inferior olive principal nucleuscontraIOPr3
Centrolateral thalamic nucleuscontraCL-0.5
Ventrolateral thalamic nucleuscontraVL3
Ventral posterolateral thalamic nucleus anterior partcontraVPLA2
Ventral posteromedial thalamic nucleus anterior partcontraVPMA2
Ventromedial thalamic nucleuscontraVM-0.5
Intralaminar nucleicontraILN-0.5
Intralaminar nuclei anterior partcontraILNA3
Parafascicular nucleuscontraPFa-0.5
Medial part of the posterior groupcontraMPTG-0.5
Ventral thalamuscontraVNT3
Rostromedial tegmental nucleusipsiRMTg2
Ventral tegmental area A10ipsiVTA1
Lateral tegmental nucleusipsiLTN1
Cerebellar cortex zebrin postive band P+ 4ipsiCERCP+4-0.5
Cerebellar cortex zebrin postive band P+ 5ipsiCERCP+5-0.5
Copula of the pyramis C1 zoneipsiCopC13
Cerebellar lobule 3a zone C1ipsiCERL3aC10
Cerebellar lobule 1 zone A medial aspectipsiCERL1AM0
Cerebellar lobule 4 zone C1ipsiCERL4C10
Cerebellar lobule 5 zone A lateral aspectipsiCERL5AL-0.5
Cerebellar lobule 5 zone BipsiCERL5B0
Cerebellar lobule 7 zone A lateral aspectipsiCERL7AL-0.5
Cerebellar lobule 7 zone A medial aspectipsiCERL7AM0
Cerebellar lobule 8 zone A medial aspectipsiCERL8AM0
Cerebellar lobule 9a zone A medial aspectipsiCERL9aAM0
Cerebellar cortex B zonesipsiBZCERC-0.5
Cerebellar cortex D zonesipsiCeD-0.5
Cerebellar cortex C zonesipsiCeZC-0.5
C1-zone of the cerebellar cortexipsiCeZC1-0.5
C2-zone of the cerebral cortexipsiCeZC2-0.5
C3-zone of the cerebellar cortexipsiCeZC3-0.5
A-zone of the cerebellar cortexipsiCeZA-0.5
Pontine grayipsiPG1
Pontine nucleiipsiPn-0.5
Parvicellular reticular nucleusipsiPCRt-0.5
Parvicellular reticular nucleus lateral partipsiPCRtl2
Vestibular ductsipsivd1
Raphe magnus nucleusipsiRMg0
Raphe pallidus nucleusipsiRPa4
Medulla oblongata lateral partipsiMeObL2
Inferior oliveipsiIO-0.5
Inferior olive caudal partipsiIOCa1
Inferior olive posterior partipsiIOpo1
ThalamusipsiT1
Rhomboid thalamic nucleusipsiRh-0.5
Ventromedial thalamic nucleus caudal partipsiVMc2
Ventromedial thalamic nucleus caudal two thirdsipsiVMctt2
Parafascicular centre-median complexipsiPFCM-0.5
Lateral habenular nucleusipsiLHb1
Ventral lateral geniculate nucleus parvicellular partipsiVLGPC-0.5
Mesodiencephalic junctionipsiMDJ-0.5
Intermediomedial cell column C1ipsiIMMC1-0.5
Dorsal horn C1ipsiDHC1-0.5
Dorsal horn C2ipsiDHC2-0.5
Lumbar segment 5ipsiL50
Lumbar segment 6ipsiL60
Sacral segment 1ipsiSa10
Sacral segment 2ipsiSa20
Sacral segment 3ipsiSa30
Sacral segment 4ipsiSa40
Coccygeal segment 1ipsiCo10
Coccygeal segment 2ipsiCo20
Coccygeal segment 3ipsiCo30
Hypoglossal nervecontra12P1
Hypoglossal nerveipsi12P3
Flexor digitorum muscleipsiMuscFD3
Biceps femoris muscleipsiMuscBF3
Tibialis anterior muscleipsiMuscTA3
Gastrocnemius muscleipsiMuscGC3

Input from

NameSideAbbr.WeightDetails
Laterodorsal tegmental nucleuscontraLDTg0
Pedunculopontine tegmental nucleuscontraPPTg0
Lateral cerebellar nucleuscontraCERL0
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Pontine nucleicontraPn1
Pontine nuclei dorsolateral partcontraBPNdL3
Pontine nuclei lateral partcontraBPNL3
Pontine nuclei peripeduncular partcontraPnPP3
Pontine nucleus medial partcontraBPNm2
Pontine nucleus ventral partcontraBPNv3
Pontine reticular nucleuscontraPRN1
Inferior olivecontraIO-0.5
Primary somatosensory cortexcontraS10.5
Secondary somatosensory cortexcontraS22
Spinal cord layers C2contraSCLC2-0.5
Spinal cord layers C3contraSCLC3-0.5
Peripeduncular nucleus dorsal and ventralipsiPPdv3
Peripeduncular nucleus dorsal partipsiPPdo3
Peripeduncular nucleus ventral partipsiPPv3
Laterodorsal tegmental nucleusipsiLDTg0
Pedunculopontine tegmental nucleusipsiPPTg0
Caudomedial part of the dorsal paraflocculusipsiDPFlcm-2
Ventral surface of the lateral part of the dorsal paraflocculusipsiDPFlLV-2
Paraflocculus caudal partipsiPFlC3
Dorsal part of the ventral paraflocculusipsiPFlvD-2
Rostral paraflocculusipsiPFlR3
Ventral surface paramedian lobuleipsiPMvs0
Lateralmost part of the copula of the pyramisipsiLmCop0
Cerebellar cortex B zonesipsiBZCERC-0.5
Cerebellar cortex D zonesipsiCeD-0.5
D1-zone of the cerebellar cortexipsiCeZD1-0.5
D2-zone of the cerebellar cortexipsiCeZD2-0.5
Cerebellar cortex C zonesipsiCeZC-0.5
C2-zone of the cerebral cortexipsiCeZC2-0.5
C3-zone of the cerebellar cortexipsiCeZC3-0.5
A-zone of the cerebellar cortexipsiCeZA-0.5
Purkinje cells of the Purkinje cell layer of the cerebellumipsiPkPC-0.5
Lateral cerebellar nucleusipsiCERL0
Locus coeruleusipsiLC-0.5
Reticulotegmental nucleus of the ponsipsiRtTg3
Pontine nucleiipsiPn1
Pontine nuclei dorsolateral partipsiBPNdL3
Pontine nuclei lateral partipsiBPNL3
Pontine nuclei peripeduncular partipsiPnPP3
Pontine nucleus medial partipsiBPNm2
Pontine nucleus ventral partipsiBPNv3
Median reticular nucleusipsiRFMED3
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus caudal and pericentral partipsiPRNcp3
Pontine reticular nucleus caudal partipsiPNC2
Pontine reticular nucleus pericentral partipsiNRTPp3
Medial vestibular nucleusipsiMVe3
Caudal raphe interpositus nucleusipsiCRIP3
Inferior oliveipsiIO3
Lateral hypothalamic areaipsiLH-0.5
Secondary somatosensory cortexipsiS21
Central cervical nucleus C1ipsiCeCvC1-0.5
Central cervical nucleus C2ipsiCeCvC2-0.5
Central cervical nucleus C3ipsiCeCvC3-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Spinal cord layer 9 C8ipsiSCL9C8-0.5
Spinal cord layer 9 L4ipsiSCL9L4-0.5
Spinal cord layer 9 L5ipsiSCL9L5-0.5
Spinal cord layer 9 L6ipsiSCL9L6-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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