University of Rostock

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Rat connectome



Zona incerta dorsal part left


Abbreviation
ZID
Color       
Superior regionsZona incerta

SynonymsAbbr.Language
Zona incerta dorsal partZIDEng
 dZI 
Zona incerta dorsal sectorZIDEng
Dorsal sector zona incertaZIdEng

SubregionsSide
Caudal part of dorsal zona incertaleft
Dorsal zona incerta lateral partleft
Lateral most part of the dorsal zona incertaleft
Rostrocaudal part of the dorsal zona incertaleft
Rostrolateral dorsal zona incertaleft
Zona incerta dorsal part dorsomedial partleft
Medial part of the dorsal zona incertaleft

Output to

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi32
Periaqueductal grayipsiPAG4
Pararubral nucleusipsiPaR-0.5
External cortex of the inferior colliculusipsiECIC1
Superior colliculusipsiSC1
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd-0.5
Substantia nigra A9ipsiSN3
Substantia nigra reticular partipsiSNR4
Ventral tegmental area A10ipsiVTA4
Ventrolateral tegmental areaipsiVLTg3
Pedunculopontine tegmental nucleusipsiPPTg4
Edinger Westphal nucleusipsiEW3
Dorsal portion of the ventral pontine regionipsiDPve0.5
Pontine gray properipsiPGp3
Reticulotegmental nucleus of the ponsipsiRtTg3
Pontine nuclei lateral partipsiBPNL1
Pontine nucleus medial partipsiBPNm1
Mesencephalic reticular formationipsiMRF4
Pontine reticular nucleusipsiPRN4
Ventrolateral pontine reticular formationipsivlPRF3
Medullary reticular nucleusipsiMdD-0.5
Raphe nucleiipsiRAN-0.5
Dorsal raphe nucleusipsiDR4
Posterior hypothalamic areaipsiPHA-0.5
Incerto hypothalamic area lateral partipsiicHYPOL-0.5
Centrolateral thalamic nucleusipsiCL3
Parafascicular thalamic nucleusipsiPF3
Posterior thalamic nuclear groupipsiPo3
Posterior thalamic nuclear group medial partipsiPoMe1
Ventral postorior lateral thalamusipsiVPLT1
Mediodorsal thalamic nucleus lateral partipsiMDL3
Midline group of the dorsal thalamusipsiMTN-0.5
Paraventricular thalamic nucleus posterior partipsiPVP-0.5
Reuniens thalamic nucleusipsiRe-0.5
Ventral posterior thalamic complexipsiVPT0
Ventral posterolateral thalamic nucleus medial partipsiVPLM1
Ventral posteromedial thalamic nucleus anterior partipsiVPMA1
Intralaminar nucleiipsiILN-0.5
Parafascicular centre-median complexipsiPFCM3
Parafascicular nucleusipsiPFa3
Parafascicular centre median complexipsiPFCMc3
Lateral posterior thalamic nucleusipsiLP3
Laterodorsal thalamic nucleusipsiLD3
Reticular thalamic nucleus intermediate partipsiRti2
Zona incerta caudal partipsiZIC3
Lateral globus pallidusipsiLGP-0.5
Medial globus pallidusipsiMGP3
Anterior cingulate cortexipsiACC-0.5
Frontal association cortexipsiFrA2
Temporal association area 3ipsiTe31
Primary auditory cortexipsiAu12
Lateral agranular prefrontal cortexipsiAGl-0.5
Primary somatosensory cortexipsiS11
Primary visual cortexipsiV12
Precommissural nucleusipsiPrC1
Cervical spinal cord layer 7ipsiCSegL7-0.5
Cervical spinal cord layer 8ipsiCSegL8-0.5
Thoracal segments layer 7ipsiTSegL7-0.5
Thoracal segments layer 8ipsiTSegL8-0.5
Ventrolateral tegmental areacontraVLTg1
Ventrolateral pontine reticular formationcontravlPRF0
Mediodorsal thalamic nucleus lateral partcontraMDL1
Zona incertacontraZI-0.5
Zona incerta caudal partcontraZIC3

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-0.5
External cortex of the inferior colliculusipsiECIC1
Superior colliculusipsiSC0.5
Superior colliculus lateral partipsiSCL2
Substantia nigra reticular partipsiSNR0.5
Ventrolateral tegmental areaipsiVLTg1
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Reticular systemipsiRF-0.5
Ventrolateral pontine reticular formationipsivlPRF3
Trigeminal sensory nuclear complexipsiTSNC-0.5
Principal sensory trigeminal nucleusipsiPr51
Spinal trigeminal nucleus interpolar partipsiSp5I1
Lateral vestibular nucleusipsiLVe-0.5
Dorsal raphe nucleusipsiDR-0.5
Cuneate nucleusipsiCu1
GracileipsiGra1
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area perifornical partipsiPFx4
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM4
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM4
Ventromedial hypothalamic nucleusipsiVMH1
Dorsal part of the lateral geniculate complexipsiLGd0
Centrolateral thalamic nucleusipsiCL3
Parafascicular nucleusipsiPFa3
Posterior groupipsiPTG3
Zona incerta caudal partipsiZIC3
Anterior pretectal nucleusipsiAPT2
Anterior pretectal nucleus caudal partipsiAPTca2
Anterior pretectal nucleus rostral partipsiAPTro2
RetinaipsiRET1
Central amygdaloid nucleusipsiCe1
Medial amygdaloid nucleusipsiMe1
Cingulate cortexipsiCg3
NeocortexipsiNEOCX0.5
Frontal cortex area 1ipsiFr10.5
Frontal cortex area 2ipsiFr2-0.5
Parietal association cortexipsiPtA0.5
Parietal cortex area 1ipsiPar1-0.5
Temporal association area 3ipsiTe31
Lateral agranular prefrontal cortexipsiAGl3
Forelimb motor cortexipsiFMCx0.5
Medial agranular prefrontal cortexipsiAGm-0.5
Primary visual cortexipsiV13
Spinal cordipsiMES1
Cervical segment 3ipsiCS30.5
Cervical segment 4ipsiCS40.5
Ventrolateral tegmental areacontraVLTg1
Ventrolateral pontine reticular formationcontravlPRF1
Principal sensory trigeminal nucleuscontraPr52
Cuneate nucleuscontraCu2
GracilecontraGra2
Olivary pretectal nucleuscontraOPT1.5
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF2
Mediodorsal thalamic nucleuscontraMD2
Zona incerta caudal partcontraZIC3
Anterior pretectal nucleus caudal partcontraAPTca1
Anterior pretectal nucleus rostral partcontraAPTro1
Frontal cortex area 2contraFr2-0.5
Spinal cordcontraMES2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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