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Rat connectome



Periventricular zone left


Abbreviation
PVZ
Color       
Superior regionsMediobasal hypothalamus

SynonymsAbbr.Language
Regio periventricularis  
Periventrikuläres Grau  
Hypothalamus medius  
Hypothalamus pars tuberalis  
Periventricular zonePVZEng
Periventrikuläre Gruppe  
Periventricular zone of the hypothalamus  
Periventricular nuclei of the hypothalamusPVEng
Periventricular area Eng
Periventricular groupPVA 
Periventricular hypothalamus Eng

SubregionsSide
Anterior periventricular nucleusleft
Anteroventral nuclei of the preoptic hypothalamusleft
Anteroventral periventricular nucleus 2left
Arcuate nucleusleft
Area around the suprachiasmatic nucleusleft
Area periventricularis hypothalamica communis [Regio hypothalamus medius]left
Area periventricularis hypothalamica posterior [Regio hypothalamus medius]left
Dorsomedial hypothalamic nucleus [Periventricular zone]left
Inferior dorsal periventricular prothalamic nucleusleft
Intermediate dorsal periventricular prothalamic nucleusleft
Intermediate periventricular nucleus of the hypothalamusleft
Internuclear arealeft
Mamillo infudibular nucleus oral parafornical regionsleft
Median preoptic nucleus 2left
Nucleus paraventricularis [Periventricular zone anterior region]left
Outside the boundaries of the suprachiasmatic nucleusleft
Perichiasmatic regionleft
Periparaventricular area of hypothalamusleft
Periventricular anteriorleft
Periventricular hypothalamic nucleusleft
Periventricular mammillaryleft
Periventricular tuberalleft
Periventricular zone anterior levelleft
Periventricular zone anterior regionleft
Periventricular zone mammillary levelleft
Periventricular zone preoptic levelleft
Periventricular zone preoptic regionleft
Periventricular zone tuberal levelleft
Periventricular zone tuberal regionleft
Preoptic periventricular nucleusleft
Subparaventricular zone of the hypothalamusleft
Superior dorsal periventricular prothalamic nucleusleft
Suprachiasmatic nucleusleft
Suprachiasmatic preoptic nucleusleft
Supraoptic nucleus [Periventricular zone]left
Supraoptic regionleft
Tuberal periventricular nucleusleft
Vascular organ of the lamina terminalis 2left
Ventral dorsal periventricular prothalamic nucleusleft
Adjacent parts of the preoptic periventricular nucleusleft
Supraventricular hypothalamic nucleusleft
Subependymal periventricular zoneleft
Immediate periventricular parenchymaleft
Anterodorsal periventricular nucleusleft
Magnocellular neurons between the supraoptic nucleus and the paraventricular nucleusleft
Border zone of the suprachiasmatic nucleusleft
Peri-arcuate region of the hypothalamusleft
Area between the arcuate nucleus and the ventromedial nucleusleft

Output to

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf0
Nuclei of the lateral lemniscusipsiNLL0
Perilemniscal nucleus ventral partipsiPLZV0
Sagulum nucleusipsiSag0
Medial paralemniscal nucleusipsiMPL0
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF0
Oculomotor nucleusipsi30.5
Dorsolateral periaqueductal grayipsiDLPAG1
Dorsomedial periaqueductal grayipsiDMPAG2
Lateral periaqueductal grayipsiLPAG3
Ventrolateral periaqueductal grayipsiVLPAG2
Tectospinal tractipsits0
Dorsal peduncular pontine nucleusipsiDPPn0
Subpeduncular tegmental nucleusipsiSPTg1
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleus central partipsiDTgC0
Dorsal tegmental nucleus pericentral partipsiDTgP0
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW1
PonsipsiP0
A5 noradrenaline cellsipsiA50
A7 noradrenaline cellsipsiA70
Barringtons nucleusipsiBar3
Locus coeruleusipsiLC2
Locus coeruleus caudal partipsiLCca1
Locus coeruleus rostral partipsiLCRo0
Parapyramidal nucleusipsiPPy0
Dorsomedial tegmental areaipsiDMTg1
Reticulotegmental nucleus of the ponsipsiRtTg0.5
Prepositus nucleusipsiPr0
Intermediate reticular nucleusipsiIRt1
Isthmic reticular formationipsiisRT1
Paramedian reticular nucleusipsiPMn0
Deep mesencephalic nucleusipsiDpMe1
Precuneiform areaipsiPCnFa1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus paramedian partipsiPRNpm0
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC1
Parabrachial nucleusipsiPB0.5
Koelliker Fuse nucleusipsiKF0
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi0
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Gigantocellular reticular nucleus ventral partipsiGiV1
Lateral reticular nucleusipsiLRt0.5
Medial subnucleus reticularis ventralisipsiMSRV0
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt0.5
Parvicellular reticular nucleus alpha partipsiPCRtA1
Rhabdoid nucleusipsiRbd0
Sphenoid nucleusipsiSph0
Nucleus of the trapezoid bodyipsiTz0
Subcoeruleus nucleus alpha partipsiSubCA0.5
Subcoeruleus nucleus dorsal partipsiSubCD1
Subcoeruleus nucleus ventral partipsiSubCV0
Supragenual nucleusipsiSGe0.5
C1 adrenaline cellsipsiC10
C2 adrenaline cellsipsiC20
C3 adrenaline cellsipsiC30
Ambiguus nucleusipsiAmb0.5
Boetzinger complexipsiBo0
Abducens nucleusipsi60
Facial nucleusipsi70
Perifacial zoneipsiP70
Hypoglossal nucleusipsi12S0
Mesencephalic trigeminal tractipsime50
Supratrigeminal nucleusipsiSu50
Motor trigeminal nucleusipsiMo50
Spinal trigeminal nucleusipsiSp5nc0
Peritrigeminal zoneipsiP50
Trigeminal solitary transition zoneipsi5Sol0
Trigeminothalamic tractipsitth0
Paratrochlear nucleusipsiPa40
Trochlear nucleusipsi40.5
Vestibular nucleiipsiVnc0
Medial vestibular nucleus magnocellular partipsiMVeMC0
Vestibulomesencephalic tractipsi8tv0
Vestibulospinal tractipsivesp0
Nucleus of the solitary tractipsiSol1
Parasolitary nucleusipsiPSol0
Solitary tractipsisol0
Dorsal motor nucleus of vagusipsi10-0.5
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus median partipsiDRM1
Median raphe nucleusipsiMnR0.5
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg1
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa2
Paramedial raphe nucleusipsiRApam1
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cells rostral partipsiA1R2
A2 noradrenergic cellsipsiA21
Epifascicular nucleusipsiEF0
Linear nucleus of the medullaipsiLi0
Nucleus of RolleripsiRo0
Inferior oliveipsiIO0
Juxtaolivary nucleusipsiJxO0
Caudal periolivary nucleusipsiCPO0
Lateral superior oliveipsiLSO0
Dorsal paragigantocellular nucleusipsiDPGi0
Lateral paragigantocellular nucleusipsiLPGi0.5
Lateral paragigantocellular nucleus alpha partipsiLPBGiA0
Lateral paragigantocellular nucleus external partipsiLPBGiE1
Pre Boetzinger complexipsiPrBo0
Retroambiguus nucleusipsiRAmb0
Rostral ventral respiratory groupipsiRVRG0
Inferior salivatory nucleusipsiIS0
Superior salivatory nucleusipsiSuS0.5
Median eminenceipsiME-0.5
Median eminence external layeripsiMEeL-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS-0.5
Basal nucleus MeynertipsiB1
Substantia innominataipsiSI-0.5
Medial preoptic areaipsiMPA-0.5
Medial preoptic nucleusipsiMPO-0.5
Periventricular zone of the rostral half of the preoptic areaipsiPREOrpv-0.5
Periventricular zoneipsiPVZ0
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleusipsiPa2
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV2
Nucleus X [Special group]ipsiNcX0
Premammillary nucleus ventral partipsiPMV0
Paraventricular thalamic nucleusipsiPV-0.5
Nucleus reuniens rostral divisionipsiRER0.5
Lateral habenular nucleus medial partipsiLHbM3
Pituitary glandipsiPIT0.5
Ansa peduncularisipsiape-0.5
Superior cerebral peduncleipsisucp1
Medial forebrain bundleipsimfb-0.5
Medial lemniscusipsiml2
Ventral spinocerebellar tractipsivsc0
Amygdaloid complexipsiAC-0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-0.5
Central amygdaloid nucleusipsiCe0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0.5
Sublenticular extended amygdalaipsiSLEA0.5
Globus pallidusipsiGP0.5
Accumbens nucleus shellipsiAcbSh0.5
HippocampusipsiHIPP1
Field CA1 of hippocampus caudal partipsiCA1ca1
Medial prefrontal cortexipsimPFC1
Lateral septal nucleusipsiLS-0.5
Septofimbrial nucleusipsiSFi-0.5
Lateral ventricleipsiLV3
Central cervical nucleusipsiMESccn0
Pyramidal tractipsipy0
Rubrospinal tractipsirs1
Intermediolateral cell column T1ipsiIMLT11
Intermediolateral cell column T2ipsiIMLT21
Intermediolateral cell column T3ipsiIMLT31
Intermediolateral cell column T4ipsiIMLT41
Lower thoracic spinal cordipsiTSegLo-0.5
Medial longitudinal fasciculuscontramlf0
Nuclei of the lateral lemniscuscontraNLL0
Perilemniscal nucleus ventral partcontraPLZV0
Sagulum nucleuscontraSag0
Medial paralemniscal nucleuscontraMPL0
Interstitial nucleus of medial longitudinal fasciculuscontraIMLF0
Oculomotor nucleuscontra3-0.5
Dorsolateral periaqueductal graycontraDLPAG-0.5
Dorsomedial periaqueductal graycontraDMPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Tectospinal tractcontrats0
Dorsal peduncular pontine nucleuscontraDPPn0
Subpeduncular tegmental nucleuscontraSPTg-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Ventral tegmental nucleuscontraVTg-0.5
Dorsal tegmental nucleus central partcontraDTgC0
Dorsal tegmental nucleus pericentral partcontraDTgP0
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Edinger Westphal nucleuscontraEW-0.5
PonscontraP0
A5 noradrenaline cellscontraA50
A7 noradrenaline cellscontraA70
Barringtons nucleuscontraBar-0.5
Locus coeruleuscontraLC-0.5
Parapyramidal nucleuscontraPPy0
Dorsomedial tegmental areacontraDMTg-0.5
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Prepositus nucleuscontraPr0
Intermediate reticular nucleuscontraIRt-0.5
Isthmic reticular formationcontraisRT-0.5
Paramedian reticular nucleuscontraPMn0
Deep mesencephalic nucleuscontraDpMe-0.5
Precuneiform areacontraPCnFa-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus paramedian partcontraPRNpm0
Pontine reticular nucleus ventral partcontraPnV-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Parabrachial nucleuscontraPB0.5
Koelliker Fuse nucleuscontraKF0
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Gigantocellular reticular nucleuscontraGi0
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt-0.5
Medial subnucleus reticularis ventraliscontraMSRV0
Medullary reticular nucleus dorsal partcontraMdDd-0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Parvicellular reticular nucleus alpha partcontraPCRtA-0.5
Rhabdoid nucleuscontraRbd0
Sphenoid nucleuscontraSph0
Nucleus of the trapezoid bodycontraTz0
Subcoeruleus nucleus alpha partcontraSubCA-0.5
Subcoeruleus nucleus dorsal partcontraSubCD-0.5
Subcoeruleus nucleus ventral partcontraSubCV0
Supragenual nucleuscontraSGe-0.5
C1 adrenaline cellscontraC10
C2 adrenaline cellscontraC20
C3 adrenaline cellscontraC30
Ambiguus nucleuscontraAmb-0.5
Boetzinger complexcontraBo0
Abducens nucleuscontra60
Facial nucleuscontra70
Perifacial zonecontraP70
Hypoglossal nucleuscontra12S0
Mesencephalic trigeminal tractcontrame50
Supratrigeminal nucleuscontraSu50
Motor trigeminal nucleuscontraMo50
Spinal trigeminal nucleuscontraSp5nc0
Peritrigeminal zonecontraP50
Trigeminal solitary transition zonecontra5Sol0
Trigeminothalamic tractcontratth0
Paratrochlear nucleuscontraPa40
Trochlear nucleuscontra4-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC0
Vestibulomesencephalic tractcontra8tv0
Vestibulospinal tractcontravesp0
Nucleus of the solitary tractcontraSol-0.5
Parasolitary nucleuscontraPSol0
Solitary tractcontrasol0
Dorsal motor nucleus of vaguscontra100
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR-0.5
Pontine raphe nucleuscontraPnR0
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Paramedial raphe nucleuscontraRApam-0.5
A1 noradrenergic cells rostral partcontraA1R-0.5
A2 noradrenergic cellscontraA2-0.5
Epifascicular nucleuscontraEF0
Linear nucleus of the medullacontraLi0
Nucleus of RollercontraRo0
Inferior olivecontraIO0
Juxtaolivary nucleuscontraJxO0
Caudal periolivary nucleuscontraCPO0
Lateral superior olivecontraLSO0
Dorsal paragigantocellular nucleuscontraDPGi0
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral paragigantocellular nucleus alpha partcontraLPBGiA0
Lateral paragigantocellular nucleus external partcontraLPBGiE-0.5
Pre Boetzinger complexcontraPrBo0
Retroambiguus nucleuscontraRAmb0
Rostral ventral respiratory groupcontraRVRG0
Inferior salivatory nucleuscontraIS0
Superior salivatory nucleuscontraSuS-0.5
Median eminencecontraME-0.5
Paraventricular hypothalamic nucleuscontraPa0.5
Supraoptic nucleus ventral part [Supraoptic region]contraSOV-0.5
Nucleus X [Special group]contraNcX0
Pituitary glandcontraPIT0.5
Superior cerebral pedunclecontrasucp-0.5
Medial lemniscuscontraml-0.5
Ventral spinocerebellar tractcontravsc0
Field CA1 of hippocampus caudal partcontraCA1ca-0.5
Central cervical nucleuscontraMESccn0
Pyramidal tractcontrapy0
Rubrospinal tractcontrars-0.5
Facial nerveipsi7fn0
Facial nervecontra7fn0
Lumbar epaxial musclesipsiMuscLep-10
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10
Intraperitoneal cavityipsiOrgiPTC2
Mammary glandipsiOrgMamG1
OvaryipsiOrgOvar1
Epididymis caudaipsiOrgEpiCau2
ProstateipsiOrgProst-10
TestisipsiOrgTest1
Vas deferensipsiOrgVasDef2
KidneyipsiOrgsKid-10
Bulbocavernosus musclecontraMuscBCV-10
Ischiocavernosus musclecontraMuscicav-10
Mammary glandcontraOrgMamG-0.5
TestiscontraOrgTest-0.5
Vas deferenscontraOrgVasDef-0.5

Input from

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG3
Dorsolateral periaqueductal gray caudal partipsiPAGdlc-0.5
Dorsolateral periaqueductal gray rostral partipsiPAGdlr3
Ventrolateral periaqueductal gray rostral partipsiPAGvlr3
Peduncularpontine nucleusipsiPPN-0.5
Ventral midbrain tegmentumipsiVeMT-0.5
Transitional region between ventral tegmental area and the medial substantia nigra pars compactaipsiTRVTAmSNC-0.5
Ventrolateral tegmental areaipsiVLTg-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Edinger Westphal nucleusipsiEW1.5
Locus coeruleusipsiLC2
Pontomesencephalic grayipsiPoMG3
Pontine reticular nucleusipsiPRN-0.5
Lateral parabrachial nucleus internal partipsiLPBI-0.5
Vestibular nucleiipsiVnc0
Dorsal raphe nucleusipsiDR-0.5
Median raphe nucleusipsiMnR-0.5
Raphe magnus nucleusipsiRMg1
A1 noradrenergic cellsipsiA1-0.5
Caudal part of the paragigantocellular reticular nucleusipsiCPGi3
Ventromedial medulla oblongataipsiMeObvm-2
Diagonal band of BrocaipsiDBB-0.5
Medial septal nucleusipsiMS3
Substantia innominataipsiSI3
Substantia innominata medial partipsiSIme1
Parvocellular portion of the periventricular preoptic regionipsiDPaPOR-0.5
Lateral preoptic area medial partipsiLPOm-0.5
Medial preoptic areaipsiMPA0
HypothalamusipsiHYPO3
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral hypothalamic area posterior partipsiLHAp-0.5
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM-0.5
Tuberal division of the lateral hypothalamic area posterolateral partipsiLHTCPL-0.5
Tuberal division of the lateral hypothalamic area medial partipsiLHTCM-0.5
Tuberal nucleusipsiTU-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe-0.5
Dorsal periventricular nucleus [Anterior hypothalamic area]ipsiDPe-0.5
Anterior hypothalamic nucleusipsiAHn-0.5
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Periventricular zoneipsiPVZ0
Arcuate nucleusipsiArc3
Arcuate nucleus medial partipsiArcM3
Paraventricular hypothalamic nucleusipsiPa0
Suprachiasmatic nucleusipsiSCh-0.5
Perifornical nucleusipsiPeF3
Mediodorsal thalamic nucleusipsiMD0
Paraventricular thalamic nucleusipsiPV0
Paraventricular thalamic nucleus rostral partipsiPVr-0.5
Subfornical organipsiSFO-0.5
Dorsal caudal extent of the subfornical organipsiSFOdc1
Parafascicular nucleusipsiPFa0
Zona incertaipsiZI0
RetinaipsiRET1
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD-0.5
Medial amygdaloid nucleus anteroventral partipsiMeAV1
Subiculum ventral partipsiSv1
Fornixipsif-0.5
Cingulate cortex area 1 caudal partipsiCg1c1
Cingulate cortex area 2 caudal partipsiCg2c1
Prelimbic cortexipsiPrL-0.5
Prelimbic cortex dorsal partipsiPrLd1.5
Prelimbic cortex ventral partipsiPrLv1.5
Infralimbic cortexipsiIL2
Frontal cortex area 2ipsiFr21
Dorsal medial septumipsiDMS1
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus caudal partipsiLSc1
Lateral septal nucleus caudal part dorsal zoneipsiLScd-0.5
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV1
Lateral septal nucleus ventral partipsiLSV-2
Septofimbrial nucleusipsiSFi-0.5
Triangular septal nucleusipsiTS-0.5
Dorsal triangular septal nucleusipsiDTS1
Ventral telencephalonipsiVTEL3
Peduncularpontine nucleuscontraPPN-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Tuberal nucleuscontraTU-0.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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