University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layer 9 C1 left


Abbreviation
SCL9C1
Color       
Superior regionsVentral horn C1

SynonymsAbbr.Language
Spinal cord layer 9 C1SCL9C1Eng

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG1
Cerebellar lobule 4ipsiCERL41
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt0
Raphe pallidus nucleusipsiRPa1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Lateral group of the dorsal thalamusipsiLAT0
Ventrobasal complexipsiVB1
Medial thalamic zoneipsiMTZ0
Spinothalamic tractipsistt-2
Cervical segment 7ipsiCS7-1
Spinal cord layers T2ipsiSCLT20
Intermediomedial cell column L1ipsiIMML12
Intermediomedial cell column L2ipsiIMML22
Intermediomedial cell column L3ipsiIMML32
Intermediomedial cell column L4ipsiIMML42
Intermediomedial cell column L5ipsiIMML52
Intermediomedial cell column L6ipsiIMML62
Periaqueductal graycontraPAG-0.5
Lateral periaqueductal graycontraLPAG0.5
Ventrolateral periaqueductal graycontraVLPAG0.5
Cerebellar lobule 4contraCERL41.5
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Mesencephalic reticular formationcontraMRF-0.5
Parabrachial nucleuscontraPB-0.5
Lateral reticular nucleuscontraLRt0
Raphe pallidus nucleuscontraRPa1
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Posterior thalamic nuclear groupcontraPo-0.5
Submedius thalamic nucleuscontraSub1
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Intralaminar nucleicontraILN-0.5
Medial thalamic zonecontraMTZ-0.5
Spinothalamic tractcontrastt-2
Ventral funiculuscontravf-2
Ventrolateral funiculuscontravLF-2
Cervical segment 7contraCS7-1
Spinal cord layers T2contraSCLT20
Ventromedial gray substance at the level of the lumbal segment 4contraL4vmg3
Superior cervical ganglionipsiAutoSCeG-0.5
Cervical oesophagusipsiOrgsOesC3
Cervical oesophaguscontraOrgsOesC3
Vibrissal follicle complexipsiVFC-0.5
Sternocleidomastoideus muscleipsiMuscSTc-0.5
Trachea sideipsiOrgsTras3
Trachea sidecontraOrgsTras1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Laterodorsal tegmental nucleusipsiLDTg-0.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO0.5
Pontine reticular nucleus caudal partipsiPNC1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg-0.5
Rostral ventrolateral medullaipsiRVLM3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleusipsiPa0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Superior colliculus lateral partcontraSCL-0.5
Locus coeruleuscontraLC2
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Parabrachial nucleuscontraPB-0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Lateral agranular prefrontal cortexcontraAGl-0.5
Forelimb motor cortexcontraFMCx3
Primary somatosensory cortexcontraS11

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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