University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Ventral horn L1 left


Abbreviation
VHL1
Color       
Superior regionsSpinal cord layers L1

SynonymsAbbr.Language
Ventral horn L1VHL1Eng

SubregionsSide
Intermediate zone L1left
Interneuron groups of layer 9 L1left
Motoneuron groups of layer 9 L1left
Spinal cord border cells L1left
Spinal cord layer 9 L1left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Tegmental areaipsiTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL2
Deep cerebellar nucleiipsiDNC1
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF-0.5
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC2
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Nucleus of the solitary tractipsiSol-0.5
Dorsal column nucleiipsiDCN2
Inferior oliveipsiIO0.5
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Lateral group of the dorsal thalamusipsiLAT1
Posterior thalamic nuclear groupipsiPo1
Submedius thalamic nucleusipsiSub1.5
Ventral posterolateral thalamic nucleusipsiVPL1
Ventrobasal complex anterior partipsiVBa0.5
Medial thalamic zoneipsiMTZ1
Central amygdaloid nucleusipsiCe0.5
Lumbar segment 1ipsiL1-1
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Ansiform lobule crus 1contraCrus1-0.5
Simple lobulecontraSim-0.5
Paravermal region of anterior lobecontraPVAnL-0.5
Deep cerebellar nucleicontraDNC0.5
Cuneiforme nucleuscontraCnF-0.5
Caudal part of the lateral reticular nucleuscontraCaLRt0
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC3
Lateral reticular nucleus subtrigeminal partcontraLRtS53
Lateral reticular nucleus ventrolateral partcontraLRtVL-0.5
Midportion of the lateral reticular nucleuscontraMpLRt3
Rostrocaudal extend of the lateral reticular nucleuscontraRCLRt-0.5
Ventrolateral part of the mid-lateral reticular nucleuscontraVLmLRt-0.5
Inferior olivecontraIO2
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Lateral group of the dorsal thalamuscontraLAT2
Posterior thalamic nuclear groupcontraPo2
Submedius thalamic nucleuscontraSub3
Ventral posterolateral thalamic nucleuscontraVPL2
Ventrobasal complex anterior partcontraVBa1
Medial thalamic zonecontraMTZ2
Central amygdaloid nucleuscontraCe0.5
Orbital cortexcontraOrC0.5
Dorsal part of the middle third of the spinocerebellar tractcontradmtsc-2
Thoracal segment 10contraT103
Thoracal segment 12contraT123
Inferior mesenteric plexusipsiAutoNimPx-0.5
Sciatic nerveipsisci-0.5
Sciatic nervecontrasci-0.5
StomachipsiOrgsStomS-0.5
External urethral sphincter muscleipsiMuscEUS-0.5
ProstateipsiOrgProst-10
Seminal vesicleipsiOrgRepSV-10
Trigone of the urinary bladderipsiOrgUrBLaT-10
SpleenipsiOrgSPL-0.5
Pancreas sideipsiOrgsPancs-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleus ventrolateral partipsiRveL-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA50.5
A7 noradrenaline cellsipsiA70.5
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Ventromedial reticular formationipsiVMRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Medial subnucleus reticularis ventralisipsiMSRV1
Subcoeruleus nucleusipsiSubC0.5
Lateral vestibular nucleusipsiLVe0.5
Dorsal raphe nucleusipsiDR3
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Lateral hypothalamic areaipsiLH1
Lateral spinal nucleusipsiMESLn-0.5
Spinal cord layer 3 L2ipsiSCL3L20.5
Spinal cord layer 4 L2ipsiSCL4L20.5
Spinal cord layer 2 L2ipsiSCL2L20.5
Spinal cord layer 3 L3ipsiSCL3L30.5
Spinal cord layer 4 L3ipsiSCL4L30.5
Spinal cord layer 2 L3ipsiSCL2L30.5
Spinal cord layer 3 L4ipsiSCL3L40.5
Spinal cord layer 4 L4ipsiSCL4L40.5
Spinal cord layer 2 L4ipsiSCL2L40.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Laterodorsal tegmental nucleuscontraLDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC2
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Gigantocellular reticular nucleus ventral partcontraGiV0.5
Medial subnucleus reticularis ventraliscontraMSRV1
Subcoeruleus nucleuscontraSubC0.5
Lateral paragigantocellular nucleuscontraLPGi1
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl0.5
Medial agranular prefrontal cortexcontraAGm0.5
Primary somatosensory cortexcontraS10.5
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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