University of Rostock

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Rat connectome



Spinal cord layers L1 left


Abbreviation
SCLL1
Color       
Superior regionsLumbar segment 1

SynonymsAbbr.Language
Spinal cord layers L1SCLL1Eng

SubregionsSide
Area X L1left
Dorsal horn L1left
Ventral horn L1left

Output to

NameSideAbbr.WeightDetails
CerebellumipsiCERE2
Cerebellar cortexipsiCERC2
Anterior lobeipsiAnL2
Lateral parabrachial nucleus lateral partipsiLPBL1
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd2
Dorsal column nucleiipsiDCN2
Nucleus ZipsiZ2
Inferior oliveipsiIO0.5
ThalamusipsiT2
Dorsal thalamusipsiDOR1
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL0
Parafascicular thalamic nucleusipsiPF0
Submedius thalamic nucleusipsiSub0
Ventrobasal complexipsiVB1
Dorsal ventrobasal complexipsiDVB2
Ventrobasal complex lateral part rostral partipsiVBLR0
Ventrobasal complex medial partipsiVBM2
Ventrobasal complex rostral partipsiVBR2
Lateral posterior thalamic nucleusipsiLP2
Lateral parabrachial nucleus lateral partcontraLPBL0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Inferior olivecontraIO3
Dorsal thalamuscontraDOR2
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF0
Submedius thalamic nucleuscontraSub2
Ventrobasal complex lateral part rostral partcontraVBLR2
Bulbocavernosus muscleipsiMuscBCV-10

Input from

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf-0.5
Lateral periaqueductal grayipsiLPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Red nucleusipsiR-0.5
Pararubral nucleusipsiPaR1
Red nucleus ventrolateral partipsiRveL3
Dorsolateral pontine tegmentumipsiDLPT-0.5
Peduncularpontine nucleusipsiPPN-0.5
Subpeduncular tegmental nucleusipsiSPTg-0.5
Parabrachial pigmented nucleusipsiPBP1
Retrorubral nucleusipsiRR-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Barringtons nucleusipsiBar2
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Parapyramidal nucleusipsiPPy-0.5
Reticulotegmental nucleusipsiRETn-0.5
Prepositus nucleusipsiPr2
Intermediate reticular nucleusipsiIRt-0.5
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Medial reticular formationipsiRFm-0.5
Midline reticular formationipsiMiRF1
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Deep mesencephalic nucleusipsiDpMe-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC-0.5
Peribrachial regionipsiPBR2
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus medial perimeteripsiLRtmp-0.5
Medullary reticular nucleusipsiMdD-0.5
Medial subnucleus reticularis ventralisipsiMSRV2
Parvicellular reticular nucleusipsiPCRt-0.5
Subcoeruleus nucleusipsiSubC3
Ambiguus nucleusipsiAmb3
Facial nucleusipsi7-0.5
Motor trigeminal nucleusipsiMo53
Vestibular nucleiipsiVnc-0.5
Medial vestibular nucleusipsiMVe2
Extra-raphe zoneipsiERZ0.5
Para-raphe zoneipsiPRZ1
Raphe nucleiipsiRAN3
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa3
Raphe pallidus nucleus rostral partipsiRParo2
Nucleus interfascicularis hypoglossiipsiNIFH2
Inferior oliveipsiIO-0.5
Medioventral periolivary nucleusipsiMVPO-0.5
Superior paraolivary nucleusipsiSPO-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Lateral hypothalamic areaipsiLH-0.5
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Retrochiasmatic areaipsiRCh1
Zona incertaipsiZI-0.5
Cingulate cortexipsiCg-0.5
Frontal association cortex lateral aspectipsiFrALA-0.5
Frontal cortex medial aspectipsiFrAma-0.5
Lateral parietal association cortexipsiLPtA-0.5
Somatomotoric regions layer 5ipsiSMRL53
Ventrolateral periaqueductal graycontraVLPAG-0.5
Pararubral nucleuscontraPaR1
Red nucleus rostral partcontraRnRo3
Red nucleus ventrolateral partcontraRveL3
Central nucleus of the inferior colliculuscontraCIC-0.5
Subpeduncular tegmental nucleuscontraSPTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Locus coeruleus ventral partcontraLCv0.5
Parapyramidal nucleuscontraPPy-0.5
Intermediate reticular nucleuscontraIRt-0.5
Deep mesencephalic nucleuscontraDpMe-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Gigantocellular reticular nucleuscontraGi3
Lateral reticular nucleuscontraLRt-0.5
Lateral reticular nucleus medial perimetercontraLRtmp-0.5
Medullary reticular nucleuscontraMdD-0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Trapezoid bodycontratz-0.5
Subcoeruleus nucleuscontraSubC-0.5
Facial nucleuscontra7-0.5
Motor trigeminal nucleuscontraMo5-0.5
Medial vestibular nucleuscontraMVe1
Nucleus of the solitary tractcontraSol1
Raphe magnus nucleuscontraRMg3
Raphe obscurus nucleuscontraROb3
Raphe pallidus nucleuscontraRPa3
Cuneate nucleuscontraCu-0.5
Inferior olivecontraIO-0.5
Medioventral periolivary nucleuscontraMVPO-0.5
Superior paraolivary nucleuscontraSPO-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Retrochiasmatic areacontraRCh0.5
Lateral agranular prefrontal cortexcontraAGl2
Medial agranular prefrontal cortexcontraAGm1
Secondary somatosensory cortexcontraS21
Somatomotoric regions layer 5contraSMRL53
Pelvic ganglionipsiAutoPeG0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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