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Rat connectome



Spinal cord layer 2 L4 right


Abbreviation
SCL2L4
Color       
Superior regionsSuperficial dorsal horn L4

SynonymsAbbr.Language
Spinal cord layer 2 L4SCL2L4Eng

SubregionsSide
Spinal cord layer 2 inner part L4right
Spinal cord layer 2 outer part L4right
Spinal cord layer 2 L4 interneuronsright

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC0.5
Periaqueductal graycontraPAG3
Dorsolateral periaqueductal graycontraDLPAG0.5
Dorsomedial periaqueductal graycontraDMPAG0.5
Lateral periaqueductal graycontraLPAG2
Ventrolateral periaqueductal graycontraVLPAG3
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus dorsal partcontraLPBD-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Lateral hypothalamic areacontraLH4
Medial division of the hypothalamuscontraMdH4
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Posterior thalamic nuclear groupcontraPo-0.5
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventrobasal complexcontraVB0.5
Ventral posterolateral thalamic nucleuscontraVPL0.5
Ventral posteromedial thalamic nucleuscontraVPM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Lateral thalamic nuclear groupcontraLTNG-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Ventral horn C1contraVHC11
Cervical segment 2contraCS20
Ventral horn C2contraVHC21
Cervical segment 3contraCS30
Ventral horn C3contraVHC31
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 8contraCS80
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 5contraT50
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 11contraT110
Spinal cord layer 3 T11contraSCL3T110.5
Spinal cord layer 4 T11contraSCL4T110.5
Spinal cord layer 2 T11contraSCL2T110.5
Ventral horn T11contraVHT110.5
Thoracal segment 12contraT120.5
Spinal cord layer 3 T12contraSCL3T120.5
Spinal cord layer 4 T12contraSCL4T120.5
Spinal cord layer 2 T12contraSCL2T120.5
Ventral horn T12contraVHT120.5
Thoracal segment 13contraT130
Spinal cord layer 3 T13contraSCL3T130.5
Spinal cord layer 4 T13contraSCL4T130.5
Spinal cord layer 2 T13contraSCL2T130.5
Ventral horn T13contraVHT130.5
Lumbar segment 1contraL10
Spinal cord layer 3 L1contraSCL3L10.5
Spinal cord layer 4 L1contraSCL4L10.5
Spinal cord layer 2 L1contraSCL2L10.5
Ventral horn L1contraVHL10.5
Lumbar segment 2contraL20
Spinal cord layer 3 L2contraSCL3L23
Spinal cord layer 4 L2contraSCL4L23
Spinal cord layer 1 L2contraSCL1L2-0.5
Spinal cord layer 2 L2contraSCL2L20.5
Ventral horn L2contraVHL20.5
Lumbar segment 3contraL30
Spinal cord layer 3 L3contraSCL3L33
Spinal cord layer 4 L3contraSCL4L33
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 2 L3contraSCL2L30.5
Ventral horn L3contraVHL30.5
Lumbar segment 4contraL40
Spinal cord layer 3 L4contraSCL3L43
Spinal cord layer 4 L4contraSCL4L43
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 2 L4contraSCL2L40.5
Ventral horn L4contraVHL40.5
Spinal cord layer 3 L5contraSCL3L50.5
Spinal cord layer 4 L5contraSCL4L50.5
Spinal cord layer 2 L5contraSCL2L50.5
Ventral horn L5contraVHL50.5
Lumbar segment 6contraL60
Spinal cord layer 3 L6contraSCL3L60.5
Spinal cord layer 4 L6contraSCL4L60.5
Spinal cord layer 2 L6contraSCL2L60.5
Ventral horn L6contraVHL60.5
Sacral segment 1contraSa10
Spinal cord layer 3 S1contraSCL3S10.5
Spinal cord layer 4 S1contraSCL4S10.5
Spinal cord layer 2 S1contraSCL2S10.5
Ventral horn S1contraVHSa10.5
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Sacral segment 4contraSa40
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG1.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Superior colliculus deep layersipsiSCd1.5
Pontomesencephalic junctionipsiPoMeJ-0.5
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF0.5
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu-0.5
GracileipsiGra1
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa0.5
ThalamusipsiT1
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Dorsolateral funiculusipsidlft-0.5
Lateral funiculusipsilf0
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Ventral horn C1ipsiVHC10.5
Cervical segment 2ipsiCS21
Ventral horn C2ipsiVHC20.5
Cervical segment 3ipsiCS31
Ventral horn C3ipsiVHC30.5
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Spinal cord layer 5 T11ipsiSCL5T113
Spinal cord layer 6 T11ipsiSCL6T113
Spinal cord layer 3 T11ipsiSCL3T113
Spinal cord layer 4 T11ipsiSCL4T113
Spinal cord layer 1 T11ipsiSCL1T113
Spinal cord layer 2 T11ipsiSCL2T113
Ventral horn T11ipsiVHT110.5
Thoracal segment 12ipsiT121
Spinal cord layer 5 T12ipsiSCL5T123
Spinal cord layer 6 T12ipsiSCL6T123
Spinal cord layer 3 T12ipsiSCL3T123
Spinal cord layer 4 T12ipsiSCL4T123
Spinal cord layer 1 T12ipsiSCL1T123
Spinal cord layer 2 T12ipsiSCL2T123
Ventral horn T12ipsiVHT120.5
Thoracal segment 13ipsiT131
Spinal cord layer 5 T13ipsiSCL5T133
Spinal cord layer 6 T13ipsiSCL6T133
Spinal cord layer 3 T13ipsiSCL3T133
Spinal cord layer 4 T13ipsiSCL4T133
Spinal cord layer 1 T13ipsiSCL1T133
Spinal cord layer 2 T13ipsiSCL2T133
Ventral horn T13ipsiVHT130.5
Lumbar segment 1ipsiL11
Spinal cord layer 5 L1ipsiSCL5L13
Spinal cord layer 6 L1ipsiSCL6L13
Spinal cord layer 3 L1ipsiSCL3L13
Spinal cord layer 4 L1ipsiSCL4L13
Spinal cord layer 1 L1ipsiSCL1L13
Spinal cord layer 2 L1ipsiSCL2L13
Ventral horn L1ipsiVHL10.5
Lumbar segment 2ipsiL21
Spinal cord layer 5 L2ipsiSCL5L23
Spinal cord layer 6 L2ipsiSCL6L23
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Ventral horn L2ipsiVHL20.5
Interneuron groups of layer 9 L2ipsiiGL9L2-0.5
Motoneuron groups of layer 9 L2ipsiMGL9L2-0.5
Lumbar segment 3ipsiL31
Spinal cord layer 5 L3ipsiSCL5L33
Spinal cord layer 6 L3ipsiSCL6L33
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Ventral horn L3ipsiVHL30.5
Interneuron groups of layer 9 L3ipsiiGL9L3-0.5
Motoneuron groups of layer 9 L3ipsiMGL9L3-0.5
Lumbar segment 4ipsiL41
Spinal cord layer 5 L4ipsiSCL5L43
Spinal cord layer 6 L4ipsiSCL6L43
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Ventral horn L4ipsiVHL40.5
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL51
Spinal cord layer 5 L5ipsiSCL5L53
Spinal cord layer 6 L5ipsiSCL6L53
Spinal cord layer 3 L5ipsiSCL3L53
Spinal cord layer 4 L5ipsiSCL4L53
Spinal cord layer 1 L5ipsiSCL1L53
Spinal cord layer 2 L5ipsiSCL2L53
Ventral horn L5ipsiVHL50.5
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal cord layer 5 L6ipsiSCL5L63
Spinal cord layer 6 L6ipsiSCL6L63
Spinal cord layer 3 L6ipsiSCL3L63
Spinal cord layer 4 L6ipsiSCL4L63
Spinal cord layer 1 L6ipsiSCL1L63
Spinal cord layer 2 L6ipsiSCL2L63
Ventral horn L6ipsiVHL60.5
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Spinal cord layer 5 S1ipsiSCL5S13
Spinal cord layer 6 S1ipsiSCL6S13
Spinal cord layer 3 S1ipsiSCL3S13
Spinal cord layer 4 S1ipsiSCL4S13
Spinal cord layer 1 S1ipsiSCL1S13
Spinal cord layer 2 S1ipsiSCL2S13
Ventral horn S1ipsiVHSa10.5
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
Sciatic nerveipsisci-2
Lumbar spinal nerve 5ipsispinL5-2
StomachipsiOrgsStomS-1
Biceps femoris musclecontraMuscBF1
Hindpaw skinipsiOrgHPS1
Biceps femoris muscleipsiMuscBF1
Ischiocavernosus muscleipsiMuscicav-10

Input from

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cells caudal partcontraA5C0.5
A5 noradrenaline cells rostral partcontraA5R0.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl2
Lateral agranular prefrontal cortex layer 5contraAGlL5-0.5
Medial agranular prefrontal cortexcontraAGm2
Medial agranular prefrontal cortex rostral partcontrarAGm-0.5
Medial agranular prefrontal cortex rostral part layer 5contrarAGmL5-0.5
Primary somatosensory cortexcontraS12
Primary somatosensory cortex layer 5contraS1L5-0.5
Secondary somatosensory cortexcontraS2-0.5
Secondary somatosensory cortex layer 5contraS2L5-0.5
Somatomotoric regions layer 5contraSMRL51
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Dorsal root ganglion L4contraDRGL40.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C0.5
A5 noradrenaline cells rostral partipsiA5R0.5
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Gigantocellular reticular nucleus ventrolateral partipsiGiVL1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg3
Raphe pallidus nucleusipsiRPa3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Somatomotoric regions layer 5ipsiSMRL51
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL44
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL51
Posterior femoral cutaneous nervecontrafemPC0
Femoral nerveipsifem2
Lateral femoral cutaneous nerveipsifemLC0
Peronal nerveipsiperonal3
Common peronal nerveipsicperonal-0.5
Deep peronal nerveipsiperonald-0.5
Posterior femoral cutaneous nerveipsifemPC-0.5
Sural nerveipsisural-0.5
Saphenous nerveipsispn-0.5
Sciatic nerveipsisci3
Tibial nerveipsitibial-0.5
Lumbar spinal nerve 4ipsispinL43
Gastrocnemius nerveipsigastrocn0
Obturator nerveipsiobturat0
Lateral plantar nerveipsilpn0
Medial plantar nerveipsimpn-0.5
Inferior gluteal nerveipsiigluteal-0.5
Subcutaneous nipple region of the mammary gland M6contraOrgsMamM6-1
Dorsal foot skinipsiOrgDF-0.5
Medial malleolus skinipsiOrgFmema-0.5
Hindpaw digit 1ipsiOrgHPD13
Hindpaw digit 2ipsiOrgHPD23
Hindpaw digit 2 dorsal surfaceipsiOrgHPD2ds-0.5
Hindpaw digit 2 plantar surfaceipsiOrgHPD2ps-0.5
Hindpaw digit 3ipsiOrgHPD33
Hindpaw digit 4ipsiOrgHPD43
Hindpaw digit 4 dorsal surfaceipsiOrgHPD4ds-0.5
Hindpaw digit 4 plantar surfaceipsiOrgHPD4ps-0.5
Hindpaw digit 5ipsiOrgHPD5-0.5
Hindpaw skinipsiOrgHPS1
Lateral hindpaw skinipsiOrgLHPS-0.5
Dorsal hindpaw skinipsiOrgHPSD-0.5
Plantar surfaceipsiOrgHPSpL-0.5
Skin of digit 1ipsiDig1-0.5
Skin of digit 2ipsiDig2-0.5
Skin of digit 3ipsiDig3-0.5
Skin of digit 4ipsiDig4-0.5
Tibialis anterior muscleipsiMuscTA-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Medial gastrocnemius muscleipsiMuscMGC3
Subcutaneous nipple region of the mammary gland M6ipsiOrgsMamM61

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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