University of Rostock

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Rat connectome



Spinal cord layers L6 left


Abbreviation
SCLL6
Color       
Superior regionsLumbar segment 6

SynonymsAbbr.Language
Spinal cord layers L6SCLL6Eng

SubregionsSide
Area X L6left
Dorsal horn L6left
Ventral horn L6left

Output to

NameSideAbbr.WeightDetails
Cerebellar cortexipsiCERC2
Anterior lobeipsiAnL-0.5
Cerebellar lobule 8ipsiCERL8-0.5
Cerebellar lobule 9ipsiCERL9-0.5
Lateral parabrachial nucleusipsiLPB0.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd2
Dorsal column nucleiipsiDCN2
External cuneate nucleusipsiECu-0.5
Nucleus ZipsiZ1
ThalamusipsiT2
Dorsal thalamusipsiDOR1
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL0
Parafascicular thalamic nucleusipsiPF0
Submedius thalamic nucleusipsiSub1.5
Ventrobasal complexipsiVB1
Dorsal ventrobasal complexipsiDVB2
Ventrobasal complex lateral part rostral partipsiVBLR0
Ventrobasal complex medial partipsiVBM1.5
Ventrobasal complex rostral partipsiVBR2
Lateral posterior thalamic nucleusipsiLP1.5
Lateral parabrachial nucleus lateral partcontraLPBL0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Dorsal thalamuscontraDOR2
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF0
Submedius thalamic nucleuscontraSub2
Ventrobasal complex lateral part rostral partcontraVBLR2
Bulbocavernosus muscleipsiMuscBCV-10

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR-0.5
Dorsolateral pontine tegmentumipsiDLPT-0.5
Peduncularpontine nucleusipsiPPN-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Sublaterodorsal tegmental nucleusipsiSLD2
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Barringtons nucleusipsiBar2
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Prepositus nucleusipsiPr2
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Medial reticular formationipsiRFm-0.5
Midline reticular formationipsiMiRF1
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Pontine reticular nucleus caudal partipsiPNC1
Peribrachial regionipsiPBR2
Gigantocellular reticular nucleusipsiGi0
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt-0.5
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC3
Ambiguus nucleusipsiAmb3
Motor trigeminal nucleusipsiMo53
Vestibular nucleiipsiVnc-0.5
Medial vestibular nucleusipsiMVe2
Extra-raphe zoneipsiERZ0.5
Para-raphe zoneipsiPRZ1
Raphe nucleiipsiRAN3
Raphe magnus nucleusipsiRMg3
Raphe magnus nucleus rostral partipsiRMgR2.5
Raphe obscurus nucleusipsiROb2
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa2
Raphe pallidus nucleus rostral partipsiRParo2
Nucleus interfascicularis hypoglossiipsiNIFH2
Paragigantocellular reticular nucleusipsiPGi1.5
Lateral paragigantocellular nucleusipsiLPGi2
Lateral hypothalamic areaipsiLH-0.5
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Retrochiasmatic areaipsiRCh1
Zona incertaipsiZI-0.5
Cingulate cortexipsiCg-0.5
Frontal association cortex lateral aspectipsiFrALA-0.5
Frontal cortex medial aspectipsiFrAma-0.5
Lateral parietal association cortexipsiLPtA-0.5
Red nucleus rostral partcontraRnRo3
Locus coeruleus ventral partcontraLCv0.5
Pontine reticular nucleus caudal partcontraPNC1
Gigantocellular reticular nucleuscontraGi0
Gigantocellular reticular nucleus alpha partcontraGiA1.5
Medial subnucleus reticularis ventraliscontraMSRV0.5
Raphe magnus nucleuscontraRMg0.5
Raphe magnus nucleus rostral partcontraRMgR1
Raphe obscurus nucleuscontraROb1
Raphe pallidus nucleuscontraRPa0.5
Nucleus interfascicularis hypoglossicontraNIFH0
Paragigantocellular reticular nucleuscontraPGi1.5
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Arcuate nucleuscontraArc0.5
Retrochiasmatic areacontraRCh0.5
Lateral agranular prefrontal cortexcontraAGl2
Medial agranular prefrontal cortexcontraAGm1
Secondary somatosensory cortexcontraS21
Pelvic ganglionipsiAutoPeG0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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