University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Cerebellar cortex left


Abbreviation
CERC
Color       
Superior regionsCerebellum

SynonymsAbbr.Language
 CBX 
 HEM 
Cerebellar cortical regions Eng
Cerebellar cortexCERCEng

SubregionsSide
Cerebellar cortex intermediate partleft
Cerebellar cortex zebrin bandsleft
Cerebellar hemisphereleft
Lateral part of the cerebellar cortexleft
Paraflocculusleft
Paravermis arealeft
Posterior lobe of the cerebellumleft
Pyramisleft
Simple lobuleleft
Transitional area of the cerebellar cortexleft
Vermisleft
Cerebellar cortex zonesleft
Cerebellar cortex layersleft
Dorsoventral extent of the cerebellar cortexleft
Medial cerebellar cortexleft
Rostrocaudal cerebellar cortexleft
Cerebellar cortex lobulesleft
Junctions of the cerebellar cortexleft
Harmaline rhythmic area of the cerebellar cortexleft
Cerebellum Golgi cellleft

Output to

NameSideAbbr.WeightDetails
Cerebellum parallel fibersipsicerepf-2
Cerebellum mossy fibersipsiceremossy-2
Reticular systemipsiRF0
CochleaipsiCO-0.5
Dorsal raphe nucleusipsiDR0
Median raphe nucleusipsiMnR0
Retrotrapezoid nucleusipsiRTN1
Interposed cerebellar nucleicontraICN1
Lateral cerebellar nucleuscontraCERL1
Retrotrapezoid nucleuscontraRTN0.5
Hypoglossal nerveipsi12P2

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact part medial tieripsiSNCM1
Ventral tegmental area A10ipsiVTA1
Laterodorsal tegmental nucleusipsiLDTg0
Ventral tegmental nucleusipsiVTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg0
Interposed cerebellar nucleus posterior part medial partipsiIntPM2
Medial cerebellar nucleusipsiMed2
PonsipsiP-0.5
A4 noradrenaline cellsipsiA43
Locus coeruleusipsiLC3
Locus coeruleus dorsal partipsiLCD2
Locus coeruleus ventral partipsiLCv1
Reticulotegmental nucleus of the ponsipsiRtTg-0.5
Pontine nucleiipsiPn3
Paramedian reticular nucleusipsiPMn-0.5
Pontine reticular nucleusipsiPRN1
Lateral reticular nucleusipsiLRt-0.5
Caudal part of the lateral reticular nucleusipsiCaLRt-0.5
Lateral reticular nucleus central partipsiLRtC-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC-0.5
Dorsolateral part of the lateral reticular nucleus magnocellular partipsiLRtMCDL1
Dorsocaudal part of the lateral reticular nucleus magnocellular partipsiDCLRtMC-0.5
Lateral reticular nucleus parvicellular partipsiLRtPC-0.5
Lateral reticular nucleus rostral partipsiLRtr-0.5
Lateral reticular nucleus subtrigeminal partipsiLRtS51
Subcoeruleus nucleusipsiSubC1
Perihypoglossal complexipsi12periC-0.5
Principal sensory trigeminal nucleus ventral partipsiPr5v2
Spinal trigeminal nucleus caudal partipsiSp5C2
Spinal trigeminal nucleus interpolar partipsiSp5I3
Spinal trigeminal nucleus oral partipsiSp5O0.5
Vestibular nucleiipsiVnc1
Caudal raphe interpositus nucleusipsiCRIP0.5
A1 noradrenergic cellsipsiA1-0.5
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr-0.5
External cuneate nucleusipsiECu-0.5
Nucleus XipsiX-0.5
Olivary nucleusipsiON3
Inferior oliveipsiIO2
Inferior olive rostral endipsiIOro-0.5
Diagonal band of BrocaipsiDBB0
Nucleus of the horizontal limb of the diagonal bandipsiHDB0
Nucleus of the vertical limb of the diagonal bandipsiVDB0
Medial septal nucleusipsiMS0
Basal nucleus MeynertipsiB0
Magnocellular preoptic nucleusipsiMCPO0
Tuberomammillary nucleus dorsomedial partipsiTBMdm1
Ventral tuberomammillary nucleusipsiVTM-0.5
HypothalamusipsiHYPO-1
Lateral hypothalamic areaipsiLH0.5
Lateral hypothalamic area perifornical partipsiPFx0.5
Reticular lateral areaipsiRLA-0.5
Dorsal hypothalamic areaipsiDA-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM0
Posterior hypothalamic areaipsiPHA0.5
HabenulaipsiHAB0
Spinal cordipsiMES-0.5
Central cervical nucleus C1ipsiCeCvC1-0.5
Central cervical nucleus C2ipsiCeCvC2-0.5
Central cervical nucleus C3ipsiCeCvC3-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Spinal cord layer 9 C8ipsiSCL9C8-0.5
Spinal cord layers L1ipsiSCLL12
Spinal cord layers L2ipsiSCLL22
Spinal cord layers L3ipsiSCLL32
Spinal cord layers L4ipsiSCLL42
Spinal cord layer 9 L4ipsiSCL9L4-0.5
Spinal cord layers L5ipsiSCLL52
Spinal cord layer 9 L5ipsiSCL9L5-0.5
Lumbar segment 6ipsiL6-0.5
Spinal cord layers L6ipsiSCLL62
Spinal cord layer 9 L6ipsiSCL9L6-0.5
Sacral segment 1ipsiSa1-0.5
Spinal cord layers S1ipsiSCLS12
Sacral segment 2ipsiSa2-0.5
Spinal cord layers S2ipsiSCLS22
Sacral segment 3ipsiSa3-0.5
Spinal cord layers S3ipsiSCLS32
Spinal cord layers S4ipsiSCLS42
Substantia nigra compact part medial tiercontraSNCM2
Ventral tegmental area A10contraVTA2
Laterodorsal tegmental nucleuscontraLDTg0
Ventral tegmental nucleuscontraVTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg0
PonscontraP-0.5
Locus coeruleuscontraLC-0.5
Locus coeruleus dorsal partcontraLCD1
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Pontine nucleicontraPn3
Paramedian reticular nucleuscontraPMn-0.5
Pontine reticular nucleuscontraPRN2
Lateral reticular nucleuscontraLRt-0.5
Caudal part of the lateral reticular nucleuscontraCaLRt-0.5
Lateral reticular nucleus central partcontraLRtC-0.5
Lateral reticular nucleus magnocellular partcontraLRtMC-0.5
Dorsal region of the rostormedial lateral reticular nucleus magnocellular partcontraDLRtMC-0.5
Lateral reticular nucleus ventromedial magnocellular partcontraLRtMCvm-0.5
Dorsocaudal part of the lateral reticular nucleus magnocellular partcontraDCLRtMC-0.5
Middle part of the lateral reticular nucleus magnocellular partcontramiLRtMC-0.5
Lateral reticular nucleus parvicellular partcontraLRtPC-0.5
Lateral reticular nucleus rostral partcontraLRtr-0.5
Perihypoglossal complexcontra12periC-0.5
Dorsal column nucleicontraDCN-0.5
Inferior olivecontraIO4
Tuberomammillary nucleus dorsomedial partcontraTBMdm1
Ventral tuberomammillary nucleuscontraVTM-0.5
Lateral hypothalamic areacontraLH-0.5
Dorsal hypothalamic areacontraDA-0.5
Posterior hypothalamic areacontraPHA-0.5
Spinal cordcontraMES-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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