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Rat connectome



Retrochiasmatic area right


Abbreviation
RCh
Color       
Superior regionsDiencephalon

SynonymsAbbr.Language
Retrochiasmatic nuclei of the hypothalamus Eng
Retrochiasmic AreaRCHEng
 RCHEng
Retrochiasmatic nucleus Eng
Retrochiasmatic hypothalamus  
Retrochiasmatic areaRChEng

SubregionsSide
Basal retrochiasmatic arearight
Retrochiasmatic area caudal partright
Retrochiasmatic area lateral partright
Retrochiasmatic area rostral partright
Retrochiasmatic area dorsal partright
Retrochiasmatic area medial partright
Retrochiasmatic area anterior partright
Retrochiasmatic area below 3V extending laterallyright
Retrochiasmatic area extending medial to 3Vright
Retrochiasmatic area posterior partright
Dorsochiasmatic arearight
Retrochiasmatic area ventral partright
Retrochiasmatic area immediately caudal to the suprarchiasmatic arearight
Retinorecipient retrochiasmatic arearight

Output to

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal graycontraDLPAG0
Lateral periaqueductal graycontraLPAG0
Ventrolateral periaqueductal graycontraVLPAG0
Lateral parabrachial nucleuscontraLPB-0.5
Lateral parabrachial nucleus dorsal partcontraLPBD-0.5
Lateral parabrachial nucleus lateral partcontraLPBL-0.5
Lateral parabrachial nucleus central lateral partcontraLPBCL-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Nucleus of the solitary tractcontraSol0.5
Ventral lateral medulla oblongatacontraMVL0.5
Rostral ventrolateral medullacontraRVLM0.5
Paragigantocellular reticular nucleuscontraPGi-0.5
Subretrofacial nucleuscontraSuReFa0
Median eminencecontraME-0.5
Medial preoptic nucleuscontraMPO0.5
Ventrolateral preoptic nucleuscontraVLPO-0.5
Dorsal tuberomammillary nucleuscontraDTM1
Ventral tuberomammillary nucleuscontraVTM1
Ventral tuberomammillary nucleus rostral partcontraVTMr1
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Anteroventral periventricular nucleus 2contraAVPV20.5
Arcuate nucleus middle partcontraArcMi-0.5
Paraventricular hypothalamic nucleuscontraPa3
Paraventricular nucleus medial partcontraPame0.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Intergeniculate leafcontraIGL-0.5
Spinal cord layers C1contraSCLC10.5
Spinal cord layers C2contraSCLC20.5
Spinal cord layers C3contraSCLC30.5
Spinal cord layers C4contraSCLC40.5
Spinal cord layers C5contraSCLC50.5
Spinal cord layers C6contraSCLC60.5
Spinal cord layers C7contraSCLC70.5
Spinal cord layers C8contraSCLC80.5
Intermediolateral cell column T1contraIMLT10.5
Spinal cord layers T1contraSCLT10.5
Intermediolateral cell column T2contraIMLT20.5
Spinal cord layers T2contraSCLT20.5
Intermediolateral cell column T3contraIMLT30.5
Spinal cord layers T3contraSCLT30.5
Intermediolateral cell column T4contraIMLT40.5
Spinal cord layers T4contraSCLT40.5
Intermediolateral cell column T5contraIMLT50.5
Spinal cord layers T5contraSCLT50.5
Intermediolateral cell column T6contraIMLT60.5
Spinal cord layers T6contraSCLT60.5
Intermediolateral cell column T7contraIMLT70.5
Spinal cord layers T7contraSCLT70.5
Intermediolateral cell column T8contraIMLT80.5
Spinal cord layers T8contraSCLT80.5
Intermediolateral cell column T9contraIMLT90.5
Spinal cord layers T9contraSCLT90.5
Intermediolateral cell column T10contraIMLT100.5
Spinal cord layers T10contraSCLT100.5
Intermediolateral cell column T11contraIMLT11-0.5
Spinal cord layers T11contraSCLT110.5
Intermediolateral cell column T12contraIMLT12-0.5
Spinal cord layers T12contraSCLT120.5
Intermediolateral cell column T13contraIMLT13-0.5
Spinal cord layers T13contraSCLT130.5
Intermediolateral cell column L1contraIMLL1-0.5
Intermediomedial cell column L1contraIMML1-0.5
Spinal cord layers L1contraSCLL10.5
Intermediomedial cell column L2contraIMML2-0.5
Spinal cord layers L2contraSCLL20.5
Intermediomedial cell column L3contraIMML3-0.5
Spinal cord layers L3contraSCLL30.5
Intermediomedial cell column L4contraIMML4-0.5
Spinal cord layers L4contraSCLL40.5
Lumbar segment 5contraL52
Intermediomedial cell column L5contraIMML5-0.5
Spinal cord layers L5contraSCLL50.5
Lumbar segment 6contraL62
Intermediomedial cell column L6contraIMML6-0.5
Spinal cord layers L6contraSCLL60.5
Spinal cord layers S1contraSCLS10.5
Spinal cord layers S2contraSCLS20.5
Spinal cord layers S3contraSCLS30.5
Spinal cord layers S4contraSCLS40.5
Central grayipsiCG1
Periaqueductal grayipsiPAG2.5
Dorsolateral periaqueductal grayipsiDLPAG2
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray rostrolateral partipsiPAGRL2
Ventrolateral periaqueductal grayipsiVLPAG1
Ventral tegmental area A10ipsiVTA1
Peripeduncular nucleusipsiPP3
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Locus coeruleus caudal partipsiLCca0
Locus coeruleus rostral partipsiLCRo1
Reticular systemipsiRF2
Dorsal reticular formationipsiDRF-0.5
Reticular formation adjacent to the nucleus ambiguusipsiRFaA-0.5
Pontine reticular nucleusipsiPRN1
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus dorsal partipsiLPBD3
Lateral parabrachial nucleus lateral partipsiLPBL3
Lateral parabrachial nucleus central lateral partipsiLPBCL3
Lateral parabrachial nucleus superior lateral partipsiPBls-0.5
Parabrachial nucleus central lateral partipsiPBCeL-0.5
Parabrachial nucleus dorsal partipsiPBD4
Parabrachial nucleus dorsolateral partipsiPBDL-0.5
Parabrachial nucleus medialipsiPBnMe-0.5
Parabrachial nucleus ventral partipsiPBV2
Lateral reticular nucleusipsiLRt2
Parvicellular reticular nucleusipsiPCRt1
Medulla oblongataipsiMeOb2
Ambiguus nucleusipsiAmb-0.5
Area postremaipsiAP1
Supratrigeminal nucleusipsiSu51
Mesencephalic trigeminal nucleusipsiMe51
Spinal trigeminal nucleus caudal partipsiSp5C1
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR0.5
Dorsal raphe nucleus median partipsiDRM1
Median raphe nucleusipsiMnR1
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa1
B4 serotonin cellsipsiB41
B6 subnucleusipsiB61
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medulla lateral partipsiCVLMl1
Rostral ventrolateral medullaipsiRVLM3
GracileipsiGra-0.5
Paragigantocellular reticular nucleusipsiPGi1
Subretrofacial nucleusipsiSuReFa0.5
Median eminenceipsiME2
Median eminence middle portion subependymal layeripsiMEmise0
Diagonal band of BrocaipsiDBB0.5
Medial preoptic areaipsiMPA2
Ventrolateral subdivision of the medial preoptic areaipsiMPAVL-0.5
Medial preoptic nucleusipsiMPO1.5
Median preoptic nucleusipsiMnPO2
Ventrolateral preoptic nucleusipsiVLPO2
Dorsal tuberomammillary nucleusipsiDTM1
Ventral tuberomammillary nucleusipsiVTM1
Ventral tuberomammillary nucleus rostral partipsiVTMr1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv1
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu0.5
Medial division of the hypothalamusipsiMdH1
Anterior hypothalamic area posterior partipsiAHAP0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP0.5
Anteroventral periventricular nucleus 2ipsiAVPV21
Arcuate nucleusipsiArc-0.5
Arcuate nucleus middle partipsiArcMi-0.5
Arcuate nucleus ventromedial partipsiArcVM0
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo0.5
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP1
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag2
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP0
Paraventricular hypothalamic nucleus magnocellular division posterior part lateral zoneipsiPVHpml0
Paraventricular hypothalamic nucleus magnocellular division posterior part medial zoneipsiPVHpmm0
Paraventricular hypothalamic nucleus magnocellular division medial partipsiPaMagM0
Paraventricular hypothalamic nucleus anterior magnocellular divisionipsiPaMagA0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD1
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo2
Paraventricular nucleus medial parvocellular part ventral zoneipsiPaMepv1
Paraventricular hypothalamic nucleus parvocellular division lateroposterior subnucleiipsiPavPoLP0
Paraventricular hypothalamic nucleus periventricular partipsiPapv2
Paraventricular nucleus anterior partipsiPaan0.5
Paraventricular nucleus dorsal most portionipsiPaDom0.5
Paraventricular nucleus dorsal edgeipsiPaDoE0.5
Paraventricular nucleus medial partipsiPame0.5
Paraventricular nucleus medial part at mid paraventricular hypothalamic nucleus levelipsiPamemi0.5
Paraventricular nucleus medial part at posterior paraventricular hypothalamic nucleus levelipsiPamepo0.5
Mid paraventricular hypothalamic nucleusipsiMiPa-0.5
Peri-paraventricular hypothalamic nucleusipsiPPa0.5
Subparaventricular zone of the hypothalamusipsiSPa-0.5
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO3
Supraoptic nucleus anterior divisionipsiSOA1
Supraoptic nucleus posterior partipsiSOP1
Supraoptic nucleus vasopressin cellsipsiSOVa0
Supraoptic nucleus oxytocin cellsipsiSOo0
Premammillary nucleus ventral partipsiPMV0.5
Retrochiasmatic areaipsiRCh1
Dorsochiasmatic areaipsiDRCh2
Dorsal part of the lateral geniculate complexipsiLGd-1
Ventral part of the lateral geniculate complexipsiLGv-1
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleusipsiRe1
Intralaminar nucleiipsiILN1
Subparafascicular thalamic nucleus caudal partipsiSPFc1
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incerta medial tipipsiZImt0.5
Pineal glandipsiPi1
Anterior lobe of pituitaryipsiAPit0
Intermediate lobe of pituitaryipsiIPit2
Posterior lobe of pituitaryipsiPPit3
Rostral part of the posterior lobe of pituitaryipsiPPitr-0.5
Vasopressinergic fiber bundle in the ventromedial stalk and postrior lobeipsiPITvaso-0.5
Accessory basal nucleusipsiAB2
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM0.5
Lateral amygdaloid nucleusipsiLA2
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv1
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Central amygdaloid nucleusipsiCe2
Anterior amygdaloid areaipsiAA1
Posterior amygdaloid nucleusipsiCOAp2
Nucleus of the lateral olfactory tractipsiLOT1
Medial amygdaloid nucleusipsiMe2
Amygdalohippocampal areaipsiAHi2
Accumbens nucleusipsiAc0
Accumbens nucleus shellipsiAcbSh-0.5
HippocampusipsiHIPP1
Anterior cingulate cortexipsiACC-0.5
Insular cortexipsiICX-0.5
Intergeniculate leafipsiIGL-0.5
Olfactory tubercleipsiTuO0
Lateral septal nucleusipsiLS1
Lateral septal nucleus rostral partipsiLSr2
Lateral septal nucleus ventral partipsiLSV2
Septohypothalamic nucleusipsiSHy2
Intermediolateral cell columnipsiIML1
Cervical segment 1ipsiCS1-0.5
Spinal cord layers C1ipsiSCLC11
Cervical segment 2ipsiCS2-0.5
Spinal cord layers C2ipsiSCLC21
Cervical segment 3ipsiCS3-0.5
Spinal cord layers C3ipsiSCLC31
Cervical segment 4ipsiCS4-0.5
Spinal cord layers C4ipsiSCLC41
Cervical segment 5ipsiCS5-0.5
Spinal cord layers C5ipsiSCLC51
Spinal cord layers C6ipsiSCLC61
Spinal cord layers C7ipsiSCLC71
Spinal cord layers C8ipsiSCLC81
Thoracal segmentsipsiTSeg-0.5
Upper thoracic spinal cordipsiTSegUp-0.5
Thoracal segment 1ipsiT11
Intermediolateral cell column T1ipsiIMLT12
Spinal cord layers T1ipsiSCLT12
Thoracal segment 2ipsiT21
Intermediolateral cell column T2ipsiIMLT22
Spinal cord layers T2ipsiSCLT21
Thoracal segment 3ipsiT31
Intermediolateral cell column T3ipsiIMLT31
Spinal cord layers T3ipsiSCLT31
Thoracal segment 4ipsiT41
Intermediolateral cell column T4ipsiIMLT41
Spinal cord layers T4ipsiSCLT41
Thoracal segment 5ipsiT51
Intermediolateral cell column T5ipsiIMLT51
Spinal cord layers T5ipsiSCLT51
Thoracal segment 6ipsiT61
Intermediolateral cell column T6ipsiIMLT61
Spinal cord layers T6ipsiSCLT61
Thoracal segment 7ipsiT71
Intermediolateral cell column T7ipsiIMLT71
Spinal cord layers T7ipsiSCLT71
Thoracal segment 8ipsiT81
Intermediolateral cell column T8ipsiIMLT81
Spinal cord layers T8ipsiSCLT81
Thoracal segment 9ipsiT91
Intermediolateral cell column T9ipsiIMLT91
Spinal cord layers T9ipsiSCLT91
Thoracal segment 10ipsiT101
Intermediolateral cell column T10ipsiIMLT101
Spinal cord layers T10ipsiSCLT101
Thoracal segment 11ipsiT111
Intermediolateral cell column T11ipsiIMLT11-0.5
Spinal cord layers T11ipsiSCLT111
Thoracal segment 12ipsiT121
Intermediolateral cell column T12ipsiIMLT12-0.5
Spinal cord layers T12ipsiSCLT121
Thoracal segment 13ipsiT131
Intermediolateral cell column T13ipsiIMLT13-0.5
Spinal cord layers T13ipsiSCLT131
Lumbar segment 1ipsiL1-0.5
Intermediolateral cell column L1ipsiIMLL1-0.5
Intermediomedial cell column L1ipsiIMML1-0.5
Spinal cord layers L1ipsiSCLL11
Intermediomedial cell column L2ipsiIMML2-0.5
Spinal cord layers L2ipsiSCLL21
Intermediomedial cell column L3ipsiIMML3-0.5
Spinal cord layers L3ipsiSCLL31
Intermediomedial cell column L4ipsiIMML4-0.5
Spinal cord layers L4ipsiSCLL41
Lumbar segment 5ipsiL52
Dorsolateral nucleus lumbal segment 5ipsiDLNL51
Intermediomedial cell column L5ipsiIMML5-0.5
Spinal cord layers L5ipsiSCLL51
Dorsal horn L5ipsiDHL51
Ventral horn L5ipsiVHL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL51
Lumbar segment 6ipsiL62
Dorsolateral nucleus lumbal segment 6ipsiDLNL61
Intermediomedial cell column L6ipsiIMML6-0.5
Spinal cord layers L6ipsiSCLL61
Dorsal horn L6ipsiDHL61
Ventral horn L6ipsiVHL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL61
Sacral segment 1ipsiSa12
Spinal cord layers S1ipsiSCLS11
Spinal cord layers S2ipsiSCLS21
Spinal cord layers S3ipsiSCLS31
Sacral segment 4ipsiSa4-0.5
Spinal cord layers S4ipsiSCLS41
Pterygopalatine ganglionipsiAutoPpG-0.5
MyocardiumcontraOrgsCorMyo-0.5
MyocardiumipsiOrgsCorMyo-0.5
StomachipsiOrgsStomS-0.5
Liver sideipsiOrgsLivs2
Liver lobeipsiOrgsLivL4
Submandibular glandcontraOrgsSubg1
Mammary glandcontraOrgMamG-0.5
Vas deferenscontraOrgVasDef-0.5
KidneycontraOrgsKid-0.5
SpleencontraOrgSPL-0.5
Intercapsular brown adipose tissueipsiOrgBATi-10
Adrenal glandipsiADRE-0.5
Thyroid glandipsiOrgThyroid2
Sublingual glandipsiOrgSubLGL-0.5
Submandibular glandipsiOrgsSubg-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Lumbar epaxial musclesipsiMuscLep-0.5
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
Femoral bone marrowipsiOrgSkFemM1
Intraperitoneal cavityipsiOrgiPTC1.5
ClitorisipsiOrgCLi-10
Mammary glandipsiOrgMamG2
VaginaipsiOrgVag-10
Middle layer of the middle portion of the uterine hornipsiOrgUTmLmph1
ProstateipsiOrgProst-0.5
Vas deferensipsiOrgVasDef1
KidneyipsiOrgsKid2
ThymusipsiThym1
SpleenipsiOrgSPL1

Input from

NameSideAbbr.WeightDetails
Parabigeminal nucleuscontraPBG0.5
Periaqueductal gray caudal partcontraPAGc1
Middle third of the intermediate layer of the superior colliculuscontraSCimt1
Middle third of the deep gray layer of the superior colliculuscontraDpGmt1
Substantia nigra A9contraSN0
Ventral tegmental area A10contraVTA0.5
Peripeduncular nucleuscontraPP0.5
Dorsal tegmental nucleuscontraDTg0
Dorsal tegmental nucleus lateral partcontraDLTN0
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Parabrachial nucleuscontraPB1
Parabrachial nucleus dorsal partcontraPBD1.5
Parabrachial nucleus ventral partcontraPBV1
C1 adrenaline cellscontraC10.5
C2 adrenaline cellscontraC20
Nucleus of the solitary tractcontraSol1
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA20
Nucleus interstitialis striae medullariscontraiSSM2
Diagonal band of BrocacontraDBB1
Medial septal nucleuscontraMS1
Medial preoptic areacontraMPA0.5
Magnocellular preoptic nucleuscontraMCPO1
Dorsomedial hypothalamic nucleuscontraDMHy1
Caudal part of the dorsomedial hypothalamic nucleuscontraDMHyC-0.5
Lateral hypothalamic areacontraLH1
Anterior hypothalamic areacontraAHA0.5
Ventromedial hypothalamic nucleuscontraVMH2.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA1.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1.5
Arcuate nucleus parts part 2contraArcPaP21
Arcuate nucleus parts part 3contraArcPaP30.5
Arcuate nucleus parts part 4contraArcPaP40.5
Arcuate nucleus parts part 5contraArcPaP50.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]contraPaMP3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Paraventricular hypothalamic nucleuscontraPa0
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Preoptic periventricular nucleuscontraPePO0
Suprachiasmatic nucleuscontraSCh0.5
Suprachiasmatic nucleus dorsomedial partcontraSCnDM-0.5
Suprachiasmatic nucleus ventrolateral partcontraSCnVL-0.5
Supraoptic nucleus [Supraoptic region]contraSO0
Supraoptic nucleus rostral partcontraSOr-0.5
Diffuse supraoptic nucleuscontraDSO-0.5
Lateral mammillary nucleuscontraLM0.5
Premammillary nucleuscontraPMAN0
Supramammillar nucleuscontraSuM0
A11 dopamine cellscontraA110
A8 dopamine cells retrorubral groupcontraRRF0.5
Perifornical nucleuscontraPeF-0.5
Paraventricular thalamic nucleuscontraPV1.5
RetinacontraRET3
Basomedial amygdaloid nucleuscontraBM0
Bed nucleus of the stria terminaliscontraBST0
Anterior cortical amygdaloid nucleuscontraACo0
Medial amygdaloid nucleuscontraMe2
Field CA1 of hippocampus ventral polecontraCA1vp-0.5
Central grayipsiCG1
Parabigeminal nucleusipsiPBG3
Ventrally in dense neuronal coreipsiPBGVc3
Parabigeminal nucleus laterally to the lateral lemniscusipsiPBGLLL3
Periaqueductal gray caudal partipsiPAGc1
Superior colliculus intermediate layersipsiSCi-0.5
Middle third of the intermediate layer of the superior colliculusipsiSCimt2
Superior colliculus deep layersipsiSCd-0.5
Middle third of the deep gray layer of the superior colliculusipsiDpGmt2
Superior colliculus deep layers rostral partipsiSCdr2
Substantia nigra A9ipsiSN0
Substantia nigra compact partipsiSNC-0.5
Substantia nigra compact part lateral tieripsiSNCL-0.5
Substantia nigra lateral partipsiSNL-0.5
Ventral tegmental area A10ipsiVTA2
Peripeduncular areaipsiPPA3
Peripeduncular nucleusipsiPP3
Lateral tegmental areaipsiLTGA-0.5
Dorsal tegmental nucleusipsiDTg0.5
Dorsal tegmental nucleus lateral partipsiDLTN0.5
Tegmentum neighbouring the parabigeminal nucleusipsiTGAPBG1
Decussation of the brachium conjunctivumipsidbcon-2
Superior pedunclar decussationipsisucepd-2
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA70.5
Locus coeruleusipsiLC1
Nucleus incertus pars compactaipsiNIc1
Reticular systemipsiRF2
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus caudal partipsiPNC1
Lateral parabrachial nucleus superior lateral partipsiPBls-0.5
Parabrachial nucleus central lateral partipsiPBCeL-0.5
Parabrachial nucleus dorsal partipsiPBD4
Parabrachial nucleus dorsolateral partipsiPBDL-0.5
Rostral extension of the parabrachial nucleus external divisonipsiPBeDR-0.5
Parabrachial nucleus ventral partipsiPBV2
Lateral reticular nucleusipsiLRt2
Medulla oblongataipsiMeOb0
C1 adrenaline cellsipsiC10.5
C2 adrenaline cellsipsiC20
C3 adrenaline cellsipsiC3-10
Nucleus of the solitary tractipsiSol1
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR2
Superior central raphe nucleusipsiCS2
Pontine raphe nucleusipsiPnR1
Pontine raphe nucleus oral partipsiPnRo-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe magnus nucleus rostral partipsiRMgR1
B4 serotonin cellsipsiB41
B6 subnucleusipsiB61
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Lateral paragigantocellular nucleusipsiLPGi1
Nucleus interstitialis striae medullarisipsiiSSM2
Median eminence middle portion subependymal layeripsiMEmise2
Diagonal band of BrocaipsiDBB1
Medial septal nucleusipsiMS1
Substantia innominataipsiSI-0.5
Medial preoptic areaipsiMPA2
Magnocellular preoptic nucleusipsiMCPO1
Periventricular area of the preoptic regionipsiPVPREO-0.5
HypothalamusipsiHYPO0.5
Dorsomedial hypothalamic nucleusipsiDMHy2
Caudal part of the dorsomedial hypothalamic nucleusipsiDMHyC-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR1
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar0.5
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR0.5
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp1.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area juxtadorsomedial regionipsiJDM1
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv1
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0.5
Lateral hypothalamic area perifornical partipsiPFx2
Mediobasal hypothalamusipsiMeHypo1
Anterior hypothalamic areaipsiAHA1.5
Anterior hypothalamic nucleus ventromedial partipsiAHAvm2
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anterior hypothalamic nucleusipsiAHn3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Lateral part of ventral subparaventricular zoneipsiSuPZvL2.5
Subparaventricular zone ventromedial partipsiSuPZvm2.5
Subparaventricular zone dorsomedial partipsiSuPZdm3
Subparaventricular zone dorsolateral partipsiSuPZdL2.5
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA3
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Arcuate nucleus parts part 2ipsiArcPaP21
Arcuate nucleus parts part 3ipsiArcPaP31.5
Arcuate nucleus parts part 4ipsiArcPaP41.5
Arcuate nucleus parts part 5ipsiArcPaP51
Arcuate nucleus ventromedial partipsiArcVM2
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Paraventricular hypothalamic nucleusipsiPa1
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Preoptic periventricular nucleusipsiPePO1
Subparaventricular zone of the hypothalamus perisuprachiasmatic regionipsiSBPVps2
Suprachiasmatic nucleusipsiSCh3
Suprachiasmatic nucleus dorsomedial partipsiSCnDM1
Suprachiasmatic nucleus ventrolateral partipsiSCnVL2
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
Supraoptic nucleus perinuclear zoneipsiSOpnz1
Supraoptic nucleus rostral partipsiSOr-0.5
Diffuse supraoptic nucleusipsiDSO-0.5
Lateral mammillary nucleusipsiLM0.5
Mammillary peduncleipsimp2
Premammillary nucleusipsiPMAN0.5
Premammillary nucleus ventral partipsiPMV1
Supramammillar nucleusipsiSuM0.5
A11 dopamine cellsipsiA110.5
A8 dopamine cells retrorubral groupipsiRRF1
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh1
Paraventricular thalamic nucleusipsiPV1.5
Paraventricular thalamic nucleus anterior part ventral portionipsiPVAV3
Posterior intralaminar thalamic nucleusipsiPIL3
Subparafascicular thalamic nucleusipsiSPF3
Subparafascicular thalamic nucleus rostral partipsiSPFr1
Zona incerta caudal partipsiZIC-1
Internal capsuleipsiic-2
RetinaipsiRET2
Retinal ganglion cellsipsiRETg3
Accessory basal nucleusipsiAB2
Basolateral amygdaloid nucleusipsiBL0.5
Basomedial amygdaloid nucleusipsiBM2
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP1
Bed nucleus of the stria terminalisipsiBST0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm2
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis magnocellular nucleusipsiBSTmc1
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA1.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd2
Interstitial nucleus of the stria terminalisipsiBSTis3
Interstitial nucleus of the stria terminalis medial partipsiBSTisM-0.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral divisionipsiCeL0.5
Central amygdaloid nucleus medial divisionipsiCeM1.5
Anterior amygdaloid areaipsiAA-0.5
Anterior cortical amygdaloid nucleusipsiACo2
Posterior amygdaloid nucleusipsiCOAp0
Nucleus of the lateral olfactory tractipsiLOT1
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD-0.5
Medial amygdaloid nucleus anteroventral partipsiMeAV2
Medial amygdaloid nucleus posterior partipsiMePo-0.5
Medial amygdaloid nucleus posteroventral partipsiMePV3
Amygdalohippocampal areaipsiAHi1
Posteromedial cortical nucleusipsiPMCo1.5
Globus pallidusipsiGP0
Caudate putamenipsiCPu0
Field CA1 of hippocampus ventral poleipsiCA1vp1
Subiculum dorsal partipsiSd1.5
Subiculum ventral partipsiSv2
Intergeniculate leafipsiIGL1
Interpeduncular nucleusipsiIP0
Lateral septal nucleusipsiLS3
Septofimbrial nucleusipsiSFi1.5
Stomach wallipsiOrgsStomWS-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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