University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Mesopontine tegmental area caudal part right


Abbreviation
TGAmc
Color       
Superior regionsMesopontine tegmental area

SynonymsAbbr.Language
Mesopontine tegmental area caudal partTGAmcEng

Output to

NameSideAbbr.WeightDetails
Cervical segmentscontraCSeg3
Dorsal horn C5contraDHC53
Ventral horn C5contraVHC53
Thoracal segmentscontraTSeg2
Lumbar segmentscontraLSeg3
Sacral segmentscontraSSeg2
Substantia nigra compact partipsiSNC1.5
Substantia nigra reticular partipsiSNR1
Locus coeruleusipsiLC1.5
Deep mesencephalic nucleusipsiDpMe2
Dorsal raphe nucleusipsiDR1.5
Basal forebrainipsiBAF1.5
Tuberomammillary nucleusipsiTuM1.5
Lateral hypothalamic areaipsiLH1.5
Intralaminar nucleiipsiILN2
Zona incertaipsiZI1.5
Caudate putamenipsiCPu1
Frontal association cortexipsiFrA1
Septal regionipsiSER1.5
Cervical segmentsipsiCSeg3
Dorsal horn C5ipsiDHC53
Ventral horn C5ipsiVHC53
Thoracal segmentsipsiTSeg2
Lumbar segmentsipsiLSeg3
Sacral segmentsipsiSSeg2

Input from

NameSideAbbr.WeightDetails
Substantia nigra compact partipsiSNC1
Substantia nigra reticular partipsiSNR1
Locus coeruleusipsiLC1.5
Deep mesencephalic nucleusipsiDpMe1.5
Dorsal raphe nucleusipsiDR1.5
Basal forebrainipsiBAF1
Tuberomammillary nucleusipsiTuM1
Lateral hypothalamic areaipsiLH1.5
Intralaminar nucleiipsiILN0
Zona incertaipsiZI1.5
Caudate putamenipsiCPu0
Frontal association cortexipsiFrA1.5
Septal regionipsiSER1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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