University of Rostock

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Rat connectome



Dorsal horn C5 right


Abbreviation
DHC5
Color       
Superior regionsSpinal cord layers C5

SynonymsAbbr.Language
Dorsal horn C5DHC5Eng

SubregionsSide
Base of dorsal horn C5right
Deep dorsal horn C5right
Intermediate zone of dorsal horn C5right
Neck of dorsal horn C5right
Nucleus proprius C5right
Superficial dorsal horn C5right

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Nuclei of the lateral lemniscuscontraNLL1
Inferior colliculuscontraICOL3
Superior colliculuscontraSC3
Tegmental areacontraTGA-0.5
Central tegmental field dorsal partcontraTGACd0
Laterodorsal tegmental nucleuscontraLDTg1
Dorsal tegmental nucleuscontraDTg0
Pedunculopontine tegmental nucleuscontraPPTg1
Mesencephalic reticular formationcontraMRF3
Cuneiforme nucleuscontraCnF-0.5
Lateral parabrachial nucleuscontraLPB0.5
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus magnocellular partcontraLRtMC3
Lateral reticular nucleus parvicellular partcontraLRtPC1
Lateral reticular nucleus subtrigeminal partcontraLRtS50
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM1
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Retrotrapezoid nucleuscontraRTN0.5
HypothalamuscontraHYPO-0.5
Submedius thalamic nucleuscontraSub3
Posterior groupcontraPTG3
Central amygdaloid nucleuscontraCe1.5
Orbital cortexcontraOrC0.5
Central grayipsiCG1
Nuclei of the lateral lemniscusipsiNLL1
Prerubral fieldipsiPR-3
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Central tegmental field dorsal partipsiTGACd0
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleusipsiDTg0
Pedunculopontine tegmental nucleusipsiPPTg1.5
Mesencephalic reticular formationipsiMRF1
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus central partipsiLPBC-0.5
Lateral parabrachial nucleus external partipsiLPBE-0.5
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus magnocellular partipsiLRtMC3
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Insular trigeminal-cuneatus lateralis nucleusipsii5CuL-0.5
Nucleus of the solitary tractipsiSol1
Caudal ventrolateral medullaipsiCVLM1
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu-0.5
Retrotrapezoid nucleusipsiRTN1
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Anteromedial thalamic nucleusipsiAM-3
Paracentral thalamic nucleusipsiPC-3
Rhomboid thalamic nucleusipsiRh-3
Submedius thalamic nucleusipsiSub2.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL-3
Ventrobasal complexipsiVB-3
Ventromedial thalamic nucleusipsiVM-3
Posterior groupipsiPTG0.5
Ventral medial nucleus of the thalamusipsiVMT-3
Zona incertaipsiZI-0.5
Lateral funiculusipsilf-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleusipsiCe0.5
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Basal gangliaipsiBG-0.5
Infralimbic cortexipsiIL-0.5
Orbital cortexipsiOrC0.5
Medial orbital cortexipsiMO-0.5
Ventrolateral funiculusipsivLF-2

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleuscontraPL-0.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Red nucleuscontraR3
Mesopontine tegmental area caudal partcontraTGAmc3
Mesopontine tegmental area rostral partcontraTGAmr2
Pedunculopontine tegmental nucleuscontraPPTg1
A5 noradrenaline cellscontraA52
A7 noradrenaline cellscontraA72
Locus coeruleuscontraLC1
Reticular systemcontraRF0.5
Mesencephalic reticular formationcontraMRF0.5
Koelliker Fuse nucleuscontraKF4
Lateral parabrachial nucleus crescent partcontraLPBCr1
Lateral parabrachial nucleus dorsal partcontraLPBD0.5
Lateral parabrachial nucleus external partcontraLPBE0.5
Lateral parabrachial nucleus ventral partcontraLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partcontraPBCeLC0.5
Rostral portion of the parabrachial nucleus central lateral partcontraPBCeLR0.5
Parabrachial nucleus medialcontraPBnMe2
Medial parabrachial nucleus external partcontraMPBE0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Lateral reticular nucleuscontraLRt0.5
Medial medullary reticular nucleuscontraMMdD1
Subcoeruleus nucleuscontraSubC2
Trigeminal ganglioncontra5Gn3
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nervecontra5GnMaEm3
Caudal area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnROM3
Superficial part of the trigeminal ganglioncontra5GnS3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus rostral partcontraMVeR-0.5
Lateral vestibular nucleuscontraLVe3
Raphe nucleicontraRAN3
Raphe magnus nucleuscontraRMg4
Lateral paragigantocellular nucleuscontraLPGi1
A11 dopamine cellscontraA110.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Primary somatosensory cortex barrel fieldcontraS1BF-0.5
Dorsal root ganglion C3contraDRGC31
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal grayipsiVLPAG1
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Lateral pontine tegmentumipsiLPTG1
Red nucleusipsiR-0.5
Dorsomedial portion of the red nucleus caudal partipsiRnCaDm-0.5
Red nucleus dorsomedial partipsiRdm3
Red nucleus rostral partipsiRnRo-0.5
Red nucleus ventrolateral partipsiRveL-0.5
Mesopontine tegmental area caudal partipsiTGAmc3
Mesopontine tegmental area rostral partipsiTGAmr2
Ventrolateral tegmental areaipsiVLTg3
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC2
Reticular systemipsiRF0.5
Mesencephalic reticular formationipsiMRF0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Koelliker Fuse nucleusipsiKF3
Lateral parabrachial nucleus crescent partipsiLPBCr1
Lateral parabrachial nucleus dorsal partipsiLPBD0.5
Lateral parabrachial nucleus external partipsiLPBE0.5
Lateral parabrachial nucleus ventral partipsiLPBV0.5
Caudal portion of the parabrachial nucleus central lateral partipsiPBCeLC1
Rostral portion of the parabrachial nucleus central lateral partipsiPBCeLR1
Parabrachial nucleus dorsal partipsiPBD-0.5
Parabrachial nucleus medialipsiPBnMe2
Medial parabrachial nucleus external partipsiMPBE0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt0.5
Subnucleus reticularis dorsalisipsiSRD-0.5
Medial medullary reticular nucleusipsiMMdD1
Subcoeruleus nucleusipsiSubC3
Mesencephalic trigeminal nucleusipsiMe5-0.5
Trigeminal ganglionipsi5Gn0.5
Mandibular region of the trigeminal ganglionipsi5GnMa1
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus rostral partipsiMVeR1
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tract commissural partipsiSolC-0.5
Raphe nucleiipsiRAN3
Raphe magnus nucleusipsiRMg4
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Ventral respiratory groupipsiVReG-0.5
Cuneate nucleusipsiCu-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Rostral ventral medulla oblongataipsiRVMeO3
Lateral hypothalamic areaipsiLH1
A11 dopamine cellsipsiA111
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C3ipsiDRGC3-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Lingual nerveipsi5V3Li0
Auriculotemporal nerveipsi5V3Aute0
Mylohyoid nerveipsimyhy0
Inferior alveolar nerveipsiialv0
Auricolotemporal nerveipsiautemp0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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