University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Gastrocnemius muscle right


Abbreviation
MuscGC
Color       
Superior regionsGastrocnemius soleus muscle

SynonymsAbbr.Language
Gastrocnemic muscleMuscGC 
Gastrocnemius muscleMuscGC 

SubregionsSide
Medial gastrocnemius muscleright
Lateral gastrocnemius muscleright

Output to

NameSideAbbr.WeightDetails
Dorsal nucleus T1ipsiDNT13
Dorsal nucleus T2ipsiDNT23
Dorsal nucleus T3ipsiDNT33
Dorsal nucleus T4ipsiDNT43
Dorsal nucleus T5ipsiDNT53
Dorsal nucleus T6ipsiDNT63
Dorsal nucleus T7ipsiDNT73
Dorsal nucleus T8ipsiDNT83
Dorsal nucleus T9ipsiDNT93
Dorsal nucleus T10ipsiDNT103
Spinal cord layer 7 T10ipsiSCL7T103
Dorsal nucleus T11ipsiDNT113
Spinal cord layer 7 T11ipsiSCL7T113
Dorsal nucleus T12ipsiDNT123
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Dorsal nucleus T13ipsiDNT133
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 4 L1ipsiSCL4L1-0.5
Spinal cord layer 7 L1ipsiSCL7L1-0.5
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 4 L2ipsiSCL4L2-0.5
Spinal cord layer 1 L2ipsiSCL1L2-0.5
Spinal cord layer 2 L2ipsiSCL2L2-0.5
Spinal cord layer 7 L2ipsiSCL7L2-0.5
Dorsal root ganglion L3ipsiDRGL3-0.5
Spinal cord layer 1 L3ipsiSCL1L3-0.5
Spinal cord layer 2 L3ipsiSCL2L3-0.5
Dorsal root ganglion L4ipsiDRGL43
Central part of SCL4L4 to medial part of SCL5L4ipsiSCL4L4mt-0.5
Central part of SCL4L4 to medial part of SCL6L4ipsiSCL4L4mt6-0.5
Spinal cord layer 1 L4ipsiSCL1L41
Spinal cord layer 2 L4ipsiSCL2L4-0.5
Spinal cord layer 2 central part of inner layer L4ipsiSCL2ipL4c-0.5
Spinal cord layer 2 outer part L4ipsiSCL2opL40
Spinal cord layer 9 L4ipsiSCL9L4-0.5
Dorsal root ganglion L5ipsiDRGL53
Central part of SCL4L5 to medial part of SCL5L5ipsiSCL4L5mt-0.5
Central part of SCL4L5 to medial part of SCL6L5ipsiSCL4L5mt6-0.5
Spinal cord layer 1 L5ipsiSCL1L51
Spinal cord layer 2 L5ipsiSCL2L5-0.5
Spinal cord layer 2 central part of inner layer L5ipsiSCL2ipL5c-0.5
Spinal cord layer 2 outer part L5ipsiSCL2opL50
Spinal cord layer 9 L5ipsiSCL9L5-0.5
Dorsal root ganglion L6ipsiDRGL63
Spinal cord layer 5 L6ipsiSCL5L6-0.5
Spinal cord layer 3 L6ipsiSCL3L6-0.5
Spinal cord layer 4 L6ipsiSCL4L6-0.5
Spinal cord layer 1 L6ipsiSCL1L6-0.5
Spinal cord layer 2 L6ipsiSCL2L6-0.5
Spinal cord layer 9 L6ipsiSCL9L6-0.5
Spinal cord layer 5 S1ipsiSCL5S1-0.5
Spinal cord layer 3 S1ipsiSCL3S1-0.5
Spinal cord layer 4 S1ipsiSCL4S1-0.5
Spinal cord layer 1 S1ipsiSCL1S13
Spinal cord layer 2 S1ipsiSCL2S1-0.5
Spinal cord layer 9 S1ipsiSCL9S1-0.5
Spinal cord layer 1 S2ipsiSCL1S23

Input from

NameSideAbbr.WeightDetails
Dorsal periaqueductal graycontraDPAG2
Periaqueductal gray rostromedial divisioncontraPAGrm3
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR4
Edinger Westphal nucleuscontraEW1
A1-zone of the cerebellar cortexcontraCeZA1-10
Dorsolateral humpcontraCERcndl-0.5
Anterior interposed nucleus medial partcontraAINM-0.5
Posterior interposed nucleus medial partcontraCERmpin-0.5
Medial cerebellar nucleuscontraMed-0.5
A5 noradrenaline cellscontraA5-0.5
Locus coeruleuscontraLC-0.5
Ventromedial reticular formationcontraVMRF-0.5
Mesopontine reticular formationcontraMPRF-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Subcoeruleus nucleuscontraSubC-0.5
Lateral vestibular nucleuscontraLVe-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Rostral ventrolateral medullacontraRVLM-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm-0.5
Preoptic nucleuscontraPREn4
Lateral hypothalamic areacontraLH4
Paraventricular hypothalamic nucleus lateral parvocellular partcontraLPPa4
Paraventricular hypothalamic nucleus medial parvocellular part ventral partcontraMPPav3
Paraventricular hypothalamic nucleuscontraPa-0.5
Paraventricular nucleus medial parvicellular part dorsal zonecontraPVHmpdo4
Lateral agranular prefrontal cortexcontraAGl-10
Periaqueductal grayipsiPAG-0.5
Dorsal periaqueductal grayipsiDPAG3
Periaqueductal gray rostromedial divisionipsiPAGrm3
Ventrolateral periaqueductal grayipsiVLPAG4
Ventrolateral periaqueductal gray caudal partipsiPAGvlc-10
Intermediate ventrolateral periaqueductal grayipsiiVLPAG-10
Red nucleusipsiR3
Peripeduncular areaipsiPPA-0.5
Edinger Westphal nucleusipsiEW4
Edinger Westphal nucleus centrally projecting neuronsipsiEWcp-10
B-zone of the cerebellar cortex intermediate part layersipsiBZCEiRCL-0.5
Paravermis area layer 2 Purkinje cellsipsiCERCPALa2PJ-10
Purkinje cells of the vermisipsiVERMPJ-10
Cerebellar cortex zonesipsiCeZ-0.5
B-zone of the cerebellar cortex layersipsiBZCERCL-0.5
D0-zone of the cerebellar cortexipsiCeZD0-0.5
A1-zone of the cerebellar cortexipsiCeZA1-0.5
Purkinje cell layer of the cerebellumipsiPk3
Cerebellar nucleiipsiDCeN3
Dorsolateral humpipsiCERcndl-0.5
Anterior interposed nucleus medial partipsiAINM-0.5
Posterior interposed nucleus medial partipsiCERmpin-0.5
Medial cerebellar nucleusipsiMed-0.5
A5 noradrenaline cellsipsiA54
A7 noradrenaline cellsipsiA7-0.5
Locus coeruleusipsiLC4
Medial reticular formationipsiRFm3
Mesopontine reticular formationipsiMPRF-0.5
Pontine reticular nucleusipsiPRN2
Gigantocellular reticular nucleus alpha partipsiGiA3
Gigantocellular reticular nucleus ventral partipsiGiV3
Medullary reticular nucleusipsiMdD-0.5
Subcoeruleus nucleusipsiSubC4
C1 adrenaline cellsipsiC1-10
C2 adrenaline cellsipsiC2-10
C3 adrenaline cellsipsiC3-10
Area postremaipsiAP4
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Lateral vestibular nucleusipsiLVe3
Nucleus of the solitary tractipsiSol4
Caudal raphe nucleiipsiRANc-10
Dorsal raphe nucleusipsiDR-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb3
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medullaipsiCVLM2
Rostral ventrolateral medullaipsiRVLM4
A1 noradrenergic cellsipsiA1-10
Inferior oliveipsiIO1
Superior oliveipsiSuOLi2
Lateral paragigantocellular nucleusipsiLPGi-0.5
Ventromedial medulla oblongataipsiMeObvm2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Ventromedial medullaipsiVMMeOb-10
Median preoptic areaipsiMnPA-10
Preoptic nucleusipsiPREn3
HypothalamusipsiHYPO-10
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area dorsolateral partipsiLHDL-10
Anterior hypothalamic areaipsiAHA-10
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM-0.5
Posterior hypothalamic areaipsiPHA-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Arcuate nucleusipsiArc-0.5
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa4
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa-0.5
Paraventricular hypothalamic nucleus medial parvocellular part ventral partipsiMPPav4
Paraventricular hypothalamic nucleusipsiPa3
Paraventricular nucleus medial parvocellular partipsiPaMep-10
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo4
Supraoptic nucleus [Supraoptic region]ipsiSO1
Perifornical nucleusipsiPeF-0.5
Retrochiasmatic areaipsiRCh-0.5
Ventrolateral thalamic nucleusipsiVL2
Motoric regionsipsiM3
Intermediolateral cell column T9ipsiIMLT93
Intermediolateral cell column T10ipsiIMLT103
Intermediolateral cell column T11ipsiIMLT113
Intermediolateral cell column T12ipsiIMLT123
Intermediolateral cell column T13ipsiIMLT133
Lumbar segmentsipsiLSeg-0.5
Ventral horn L4ipsiVHL43
Spinal cord border cells L4ipsiVHBCL4-0.5
Spinal cord layer 9 L4ipsiSCL9L43
Ventral horn L5ipsiVHL53
Gastrocnemius motoneuron groups of layer 9 L5ipsiMGL9L5gas-0.5
Spinal cord border cells L5ipsiVHBCL5-0.5
Spinal cord layer 9 L5ipsiSCL9L53
Ventral horn L6ipsiVHL63
Gastrocnemius motoneuron groups of layer 9 L6ipsiMGL9L6gas-0.5
Upper part of VHL6 near surface of grey matteripsiVHBCL6s-0.5
Spinal cord layer 9 L6ipsiSCL9L63
Ventral horn S1ipsiVHSa13
Spinal cord layer 9 S1ipsiSCL9S13
Spinal cord layer 9 S2ipsiSCL9S20
Lumbosacral spinal cord layer 9ipsiLSSCL9-0.5
Motorneuron groups in the ventral horn of spinal cordipsimnVHMES-0.5
Lateral ventral horn of spinal cordipsiLVHMES-0.5
MotoneuronsipsiVMESmot-0.5
Saphenous nerveipsispn-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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