University of Rostock

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Rat connectome



Reticulotegmental nucleus of the pons left


Abbreviation
RtTg
Color       
Superior regionsReticulotegmental nucleus

SynonymsAbbr.Language
 TRN 
Reticular tegmental nucleus pons  
Reticular tegmental nucleus of the pons  
Nucleus reticularis tegmenti pontisNRTPLat
Nucleus reticularis tegmentalis pontisRtpLat
Reticulotegmental nucleus of the ponsRtTgEng
Nucleus reticularis tegmenti pontisNRTPEng
Tegmental Reticular nucleus  
Ventral to median raphe nucleus Eng
Pontine reticulotegmental nucleus Eng

SubregionsSide
Central part of the reticulotegmental nucleus of the ponsleft
Dorsal part of the reticulotegmental nucleus of the ponsleft
Middle three fifthes of the reticulotegmental nucleus of the ponsleft
Reticulotegmental nucleus of the pons dorsolateral partleft
Reticulotegmental nucleus of the pons dorsomedial partleft
Reticulotegmental nucleus of the pons lateral partleft
Reticulotegmental nucleus of the pons medial partleft
Reticulotegmental nucleus of the pons pericentral partleft
Reticulotegmental nucleus of the pons ventrolateral partleft
Pericentral portion of the nucleus reticularis tegmenti pontisleft
Reticulotegmental nucleus of the pons rostral partleft

Output to

NameSideAbbr.WeightDetails
Cerebellar cortexipsiCERC-0.5
Cerebellar hemisphereipsiCEREBH-0.5
ParaflocculusipsiPFl2
Parafloccular stalkipsiPFls3
Paraflocculus ventral partipsiPFlv3
Paravermal area lobule 8ipsiCERCPAL83
Posterior lobe of the cerebellumipsiCERCPL2.5
Ansiform lobule crus 1ipsiCrus13
Anteriormost sublobule of crus 1ipsiACrus1-0.5
Intermediate portion of crus 1ipsiiCrus10.5
Lateral aspect of the midportion of crus 1ipsiLMCrus1-0.5
Lateral portion of crus 1ipsiLCrus1-0.5
Posterior lobule of crus 1ipsiPCrus1-0.5
Paravermal region of crus 1ipsiCrus1pv-0.5
Ansiform lobule crus 2ipsiCrus23
Posterior sublobules of the crus 2ipsiPCrus2-0.5
Paramedian lobuleipsiPM3
Copula of the pyramisipsiCop1
Simple lobuleipsiSim2
Lateral portion of the simple lobuleipsiLSim-0.5
Medial portion of the simple lobuleipsiMSim0
VermisipsiVERM-0.5
Anterior lobeipsiAnL1
Cerebellar lobule 2ipsiCERL20.5
Cerebellar lobule 3ipsiCERL31
Cerebellar lobule 4ipsiCERL42
Cerebellar lobule 5ipsiCERL52
Cerebellar lobule 7ipsiCERL74
Cerebellar lobule 8ipsiCERL82
Cerebellar lobule 9ipsiCERL92
Cerebellar lobule 9cipsiUVUc0
Cerebellar lobule 10ipsiCERL102
Cerebellar lobule 10 medial partipsiCERL10Me0.5
Intermediate part of nodulusipsiCERL10im0.5
Cerebellar lobule 6ipsiCERL63
Cerebellar lobule 6aipsiCERL6a3
Cerebellar lobule 6bipsiCERL6b3
Cerebellar lobule 6cipsiCERL6c3
Posterior lobe vermisipsiPLVERM2
Cerebellar nucleiipsiDCeN3
Interposed cerebellar nucleiipsiICN3
Anterior interposed nucleus dorsomedial partipsiAINDM-0.5
Anterior interposed nucleus rostral partipsiAINR-0.5
Interposed cerebellar nuclei ventral partipsiICNV-0.5
Posterior interposed nucleusipsiCERpin0
Posterior interposed nucleus dorsal intermediate partipsiCERpinDi-0.5
Posterior interposed nucleus lateral partipsiCERpinL3
Posterior interposed nucleus ventral partipsiCERpinV3
Posterior interposed nucleus ventrolateral partipsiCERpinVL-0.5
Lateral cerebellar nucleusipsiCERL3
Medial cerebellar nucleusipsiMed3
Medial cerebellar nucleus ventral partipsiMedV-0.5
Dorsolateral protuberanceipsiDLPr-0.5
FlocculusipsiFl1
Middle cerebellar peduncleipsimcp-2
Locus coeruleusipsiLC-0.5
Pontine reticular nucleusipsiPRN0
Medullary reticular nucleus dorsal partipsiMdDd2
Pontine vestibular nucleiipsiPoVnc-0.5
Nucleus of the solitary tract lateral partipsiSolL1
Dorsal raphe nucleusipsiDR0
Raphe magnus nucleusipsiRMg-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Substantia innominataipsiSI-0.5
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA-0.5
Lateral hypothalamic areaipsiLH-0.5
Suprachiasmatic nucleusipsiSCh3
Anterodorsal thalamic nucleusipsiAD1
Anteroventral thalamic nucleusipsiAV1
Medial terminal nucleus of the accessory optic tractipsiMT-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Central amygdaloid nucleusipsiCe-0.5
Lateral entorhinal cortexipsiLEnt-0.5
Medial entorhinal cortexipsiMEnt3
Perirhinal cortexipsiA350
Septal regionipsiSER-0.5
Thoracal segmentsipsiTSeg-0.5
Cerebellar cortexcontraCERC-0.5
ParaflocculuscontraPFl1
Paraflocculus ventral partcontraPFlv4
Paravermal area lobule 8contraCERCPAL83
Ansiform lobule crus 1contraCrus14
Anteriormost sublobule of crus 1contraACrus1-0.5
Intermediate portion of crus 1contraiCrus10.5
Lateral aspect of the midportion of crus 1contraLMCrus1-0.5
Lateral portion of crus 1contraLCrus1-0.5
Posterior lobule of crus 1contraPCrus1-0.5
Paravermal region of crus 1contraCrus1pv-0.5
Ansiform lobule crus 2contraCrus23
Anterior soblobules of the crus 2contraACrus2-0.5
Posterior sublobules of the crus 2contraPCrus2-0.5
Paramedian lobulecontraPM3
Copula of the pyramiscontraCop1
Simple lobulecontraSim2
Lateral portion of the simple lobulecontraLSim-0.5
Medial portion of the simple lobulecontraMSim0
VermiscontraVERM-0.5
Cerebellar lobule 2contraCERL20.5
Cerebellar lobule 3contraCERL31
Cerebellar lobule 4contraCERL41.5
Cerebellar lobule 5contraCERL52
Cerebellar lobule 7contraCERL74
Cerebellar lobule 8contraCERL81
Cerebellar lobule 9contraCERL90.5
Cerebellar lobule 9ccontraUVUc0
Cerebellar lobule 10contraCERL10-0.5
Cerebellar lobule 10 medial partcontraCERL10Me0.5
Intermediate part of noduluscontraCERL10im0.5
Cerebellar lobule 6contraCERL63
Cerebellar lobule 6acontraCERL6a3
Cerebellar lobule 6bcontraCERL6b3
Cerebellar lobule 6ccontraCERL6c3
Cerebellar nucleicontraDCeN-0.5
Lateral cerebellar nucleuscontraCERL3
FlocculuscontraFl1
Middle cerebellar pedunclecontramcp-2
Pontine reticular nucleuscontraPRN1
Medullary reticular nucleus dorsal partcontraMdDd0.5
Anterodorsal thalamic nucleuscontraAD0.5
Anteroventral thalamic nucleuscontraAV0.5
Medial terminal nucleus of the accessory optic tractcontraMT-0.5
Basolateral amygdaloid nucleuscontraBL-0.5
Central amygdaloid nucleuscontraCe-0.5
Lateral entorhinal cortexcontraLEnt-0.5
Medial entorhinal cortexcontraMEnt2
Hypoglossal nerveipsi12P0.5

Input from

NameSideAbbr.WeightDetails
Superior colliculusipsiSC3
Superior colliculus intermediate and deep layersipsiSCidLa-0.5
Superior colliculus deep layersipsiSCd1
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR1
Parabrachial pigmented nucleusipsiPBP1
Paranigral nucleusipsiPN1
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Visual tegmental relay zoneipsiViTRZo0
Dorsolateral humpipsiCERcndl0
Interposed cerebellar nucleiipsiICN2
Anterior interposed nucleusipsiAIN0
Posterior interposed nucleusipsiCERpin0
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed0
Deep mesencephalic nucleus medial partipsiDpMeM3
Pontine reticular nucleusipsiPRN3
Subcoeruleus nucleus dorsal partipsiSubCD1
Dorsal raphe nucleus rostral partipsiDRr-0.5
Median raphe nucleusipsiMnR0
Superior central raphe nucleusipsiCS2
Diagonal band of BrocaipsiDBB-0.5
Medial septal nucleusipsiMS-0.5
Basal nucleus MeynertipsiB-0.5
Magnocellular preoptic nucleusipsiMCPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0.5
Lateral hypothalamic area caudal partipsiLHc-0.5
Caudal lateral hypothalamic area at the level of the mammillary regionipsiLHcMAM-0.5
Lateral hypothalamic area dorsal partipsiLHd0.5
Lateral hypothalamic area ventral partipsiLHAvp0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Posterior hypothalamic nucleusipsiPH-0.5
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo0
Periventricular zoneipsiPVZ0.5
Mammillary bodyipsiCMAM3
Lateral mammillary nucleusipsiLM3
Medial mammillary nucleusipsiMMn-0.5
Medial mammillary nucleus lateral partipsiML1
Medial mammillary nucleus medial partipsiMM1
Medial mammillary nucleus median partipsiMMnm1
Medial mammillary nucleus posterior partipsiMMNp0.5
Medial part of the caudal perifornical areaipsiPeFCM1
Lateral part of the caudal perifornical areaipsiPeFCL1
Parafascicular thalamic nucleus lateral partipsiPFL1
Zona incertaipsiZI1
Zona incerta caudal poleipsiCaPoZI3
Zona incerta dorsal partipsiZID3
Zona incerta ventral partipsiZIV3
Nucleus of the optic tractipsiOT-0.5
Pretectal regionipsiPRT-0.5
Anterior pretectal nucleusipsiAPT-0.5
Medial terminal nucleus of the accessory optic tractipsiMT1
Ventral part of the medial terminal nucleus of the accessory optic tractipsiMTV0
Dorsal part of the medial terminal nucleus of the accessory optic tractipsiMTD0
Cerebral cortexipsiCEC-0.5
Cingulate cortexipsiCg-0.5
Frontal association cortexipsiFrA-0.5
Parietal association cortexipsiPtA-0.5
Temporal cortexipsiTE-0.5
Frontal polar cortexipsiFP2
Insular cortexipsiICX-0.5
Somatomotoric regionsipsiSMR2
Visual regionsipsiVR0
Ventral lateral geniculate nucleusipsiVLG-0.5
Superior colliculus intermediate and deep layerscontraSCidLa-0.5
Parabrachial pigmented nucleuscontraPBP1
Paranigral nucleuscontraPN1
Laterodorsal tegmental nucleuscontraLDTg-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Visual tegmental relay zonecontraViTRZo1
Dorsolateral humpcontraCERcndl2
Interposed cerebellar nucleicontraICN-0.5
Anterior interposed nucleuscontraAIN3
Posterior interposed nucleuscontraCERpin2
Lateral cerebellar nucleuscontraCERL3
Medial cerebellar nucleuscontraMed1
Pontine reticular nucleuscontraPRN1
Spinal trigeminal nucleuscontraSp5nc-0.5
Diagonal band of BrocacontraDBB-0.5
Medial septal nucleuscontraMS-0.5
Basal nucleus MeynertcontraB-0.5
Magnocellular preoptic nucleuscontraMCPO-0.5
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd-0.5
Lateral hypothalamic area ventral partcontraLHAvp0
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Posterior hypothalamic nucleuscontraPH0.5
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Periventricular zonecontraPVZ-0.5
Medial mammillary nucleus median partcontraMMnm-0.5
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Zona incertacontraZI1
Cerebral cortexcontraCEC-0.5
ForelimbipsiMuscFo2
HindlimbipsiMuscHi2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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