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Rat connectome



Biceps femoris muscle right


Abbreviation
MuscBF
Color       
Superior regionsFemoral muscles

SynonymsAbbr.Language
Biceps femoris muscleMuscBF 

SubregionsSide
Posterior head of the biceps femoris muscleright

Output to

NameSideAbbr.WeightDetails
Spinal cord layer 9 L4ipsiSCL9L4-0.5
Spinal cord layer 3 L5ipsiSCL3L5-0.5
Spinal cord layer 4 L5ipsiSCL4L5-0.5
Spinal cord layer 1 L5ipsiSCL1L5-0.5
Spinal cord layer 9 L5ipsiSCL9L5-0.5
Spinal cord layer 9 L6ipsiSCL9L6-0.5

Input from

NameSideAbbr.WeightDetails
Intermediate zone of spinal cordcontraIzMES1
Spinal cord layer 1 C1contraSCL1C1-0.5
Spinal cord layer 2 C1contraSCL2C11
Spinal cord layer 1 C2contraSCL1C2-0.5
Spinal cord layer 2 C2contraSCL2C21
Spinal cord layer 1 C3contraSCL1C3-0.5
Spinal cord layer 2 C3contraSCL2C31
Spinal cord layer 1 C4contraSCL1C4-0.5
Spinal cord layer 2 C4contraSCL2C41
Spinal cord layer 1 C5contraSCL1C5-0.5
Spinal cord layer 2 C5contraSCL2C51
Spinal cord layer 1 C6contraSCL1C6-0.5
Spinal cord layer 2 C6contraSCL2C61
Spinal cord layer 1 C7contraSCL1C7-0.5
Spinal cord layer 2 C7contraSCL2C71
Spinal cord layer 1 C8contraSCL1C8-0.5
Spinal cord layer 2 C8contraSCL2C81
Spinal cord layer 1 T1contraSCL1T1-0.5
Spinal cord layer 2 T1contraSCL2T11
Spinal cord layer 1 T2contraSCL1T2-0.5
Spinal cord layer 2 T2contraSCL2T21
Spinal cord layer 1 T3contraSCL1T3-0.5
Spinal cord layer 2 T3contraSCL2T31
Spinal cord layer 1 T4contraSCL1T4-0.5
Spinal cord layer 2 T4contraSCL2T41
Spinal cord layer 1 T5contraSCL1T5-0.5
Spinal cord layer 2 T5contraSCL2T51
Spinal cord layer 1 T6contraSCL1T6-0.5
Spinal cord layer 2 T6contraSCL2T61
Spinal cord layer 1 T7contraSCL1T7-0.5
Spinal cord layer 2 T7contraSCL2T71
Spinal cord layer 1 T8contraSCL1T8-0.5
Spinal cord layer 2 T8contraSCL2T81
Spinal cord layer 1 T9contraSCL1T9-0.5
Spinal cord layer 2 T9contraSCL2T91
Spinal cord layer 1 T10contraSCL1T10-0.5
Spinal cord layer 2 T10contraSCL2T101
Spinal cord layer 1 T11contraSCL1T11-0.5
Spinal cord layer 2 T11contraSCL2T111
Spinal cord layer 1 T12contraSCL1T12-0.5
Spinal cord layer 2 T12contraSCL2T121
Spinal cord layer 1 T13contraSCL1T13-0.5
Spinal cord layer 2 T13contraSCL2T131
Spinal cord layer 1 L1contraSCL1L1-0.5
Spinal cord layer 2 L1contraSCL2L11
Spinal cord layer 1 L2contraSCL1L2-0.5
Spinal cord layer 2 L2contraSCL2L21
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 1 L3contraSCL1L3-0.5
Spinal cord layer 2 L3contraSCL2L31
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 1 L4contraSCL1L4-0.5
Spinal cord layer 2 L4contraSCL2L41
Spinal cord layer 1 L5contraSCL1L5-0.5
Spinal cord layer 2 L5contraSCL2L51
Spinal cord layer 1 L6contraSCL1L6-0.5
Spinal cord layer 2 L6contraSCL2L61
Spinal cord layer 1 S1contraSCL1S1-0.5
Spinal cord layer 2 S1contraSCL2S11
Spinal cord layer 1 S2contraSCL1S2-0.5
Spinal cord layer 2 S2contraSCL2S21
Spinal cord layer 1 S3contraSCL1S3-0.5
Spinal cord layer 2 S3contraSCL2S31
Spinal cord layer 1 S4contraSCL1S4-0.5
Spinal cord layer 2 S4contraSCL2S41
Spinal cord layer 1 Co1contraSCL1Co1-0.5
Spinal cord layer 2 Co1contraSCL2Co11
Spinal cord layer 1 Co2contraSCL1Co2-0.5
Spinal cord layer 2 Co2contraSCL2Co21
Spinal cord layer 1 Co3contraSCL1Co3-0.5
Spinal cord layer 2 Co3contraSCL2Co31
Red nucleusipsiR1
Cerebellar cortex zonesipsiCeZ-0.5
Purkinje cell layer of the cerebellumipsiPk3
Cerebellar nucleiipsiDCeN3
Medial reticular formationipsiRFm2
Lateral vestibular nucleusipsiLVe2
Inferior oliveipsiIO1
Ventrolateral thalamic nucleusipsiVL1
Motoric regionsipsiM3
Intermediate zone of spinal cordipsiIzMES1
Intermediolateral cell columnipsiIML-0.5
Lateral spinal nucleusipsiMESLn-0.5
Spinal cord layer 1 C1ipsiSCL1C1-0.5
Spinal cord layer 2 C1ipsiSCL2C11
Spinal cord layer 1 C2ipsiSCL1C2-0.5
Spinal cord layer 2 C2ipsiSCL2C21
Spinal cord layer 1 C3ipsiSCL1C3-0.5
Spinal cord layer 2 C3ipsiSCL2C31
Spinal cord layer 1 C4ipsiSCL1C4-0.5
Spinal cord layer 2 C4ipsiSCL2C41
Spinal cord layer 1 C5ipsiSCL1C5-0.5
Spinal cord layer 2 C5ipsiSCL2C51
Spinal cord layer 1 C6ipsiSCL1C6-0.5
Spinal cord layer 2 C6ipsiSCL2C61
Spinal cord layer 1 C7ipsiSCL1C7-0.5
Spinal cord layer 2 C7ipsiSCL2C71
Spinal cord layer 1 C8ipsiSCL1C8-0.5
Spinal cord layer 2 C8ipsiSCL2C81
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T11
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T21
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Spinal cord layer 2 T3ipsiSCL2T31
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Spinal cord layer 2 T4ipsiSCL2T41
Spinal cord layer 1 T5ipsiSCL1T5-0.5
Spinal cord layer 2 T5ipsiSCL2T51
Spinal cord layer 1 T6ipsiSCL1T6-0.5
Spinal cord layer 2 T6ipsiSCL2T61
Spinal cord layer 1 T7ipsiSCL1T7-0.5
Spinal cord layer 2 T7ipsiSCL2T71
Spinal cord layer 1 T8ipsiSCL1T8-0.5
Spinal cord layer 2 T8ipsiSCL2T81
Spinal cord layer 1 T9ipsiSCL1T9-0.5
Spinal cord layer 2 T9ipsiSCL2T91
Spinal cord layer 1 T10ipsiSCL1T10-0.5
Spinal cord layer 2 T10ipsiSCL2T101
Spinal cord layer 1 T11ipsiSCL1T11-0.5
Spinal cord layer 2 T11ipsiSCL2T111
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Spinal cord layer 2 T12ipsiSCL2T121
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T131
Spinal cord layer 1 L1ipsiSCL1L1-0.5
Spinal cord layer 2 L1ipsiSCL2L11
Spinal cord layer 1 L2ipsiSCL1L2-0.5
Spinal cord layer 2 L2ipsiSCL2L21
Spinal cord layer 9 L2ipsiSCL9L23
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 4 L3ipsiSCL4L3-0.5
Spinal cord layer 1 L3ipsiSCL1L3-0.5
Spinal cord layer 2 L3ipsiSCL2L31
Spinal cord layer 9 L3ipsiSCL9L33
Spinal cord layer 5 L4ipsiSCL5L4-0.5
Spinal cord layer 4 L4ipsiSCL4L4-0.5
Spinal cord layer 1 L4ipsiSCL1L4-0.5
Spinal cord layer 2 L4ipsiSCL2L41
Ventral horn L4ipsiVHL4-0.5
Spinal cord layer 9 L4ipsiSCL9L43
Spinal cord layer 1 L5ipsiSCL1L5-0.5
Spinal cord layer 2 L5ipsiSCL2L51
Ventral horn L5ipsiVHL5-0.5
Spinal cord layer 9 L5ipsiSCL9L53
Spinal cord layer 1 L6ipsiSCL1L6-0.5
Spinal cord layer 2 L6ipsiSCL2L61
Spinal cord layer 1 S1ipsiSCL1S1-0.5
Spinal cord layer 2 S1ipsiSCL2S11
Spinal cord layer 1 S2ipsiSCL1S2-0.5
Spinal cord layer 2 S2ipsiSCL2S21
Spinal cord layer 1 S3ipsiSCL1S3-0.5
Spinal cord layer 2 S3ipsiSCL2S31
Spinal cord layer 1 S4ipsiSCL1S4-0.5
Spinal cord layer 2 S4ipsiSCL2S41
Spinal cord layer 1 Co1ipsiSCL1Co1-0.5
Spinal cord layer 2 Co1ipsiSCL2Co11
Spinal cord layer 1 Co2ipsiSCL1Co2-0.5
Spinal cord layer 2 Co2ipsiSCL2Co21
Spinal cord layer 1 Co3ipsiSCL1Co3-0.5
Spinal cord layer 2 Co3ipsiSCL2Co31
Ventral horn of spinal cordipsiVHMES-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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