University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layers C8 left


Abbreviation
SCLC8
Color       
Superior regionsCervical segment 8

SynonymsAbbr.Language
Spinal cord layers C8SCLC8Eng

SubregionsSide
Area X C8left
Dorsal horn C8left
Ventral horn C8left

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG2
Superior colliculusipsiSC2
CerebellumipsiCERE2
Mesencephalic reticular formationipsiMRF2
Parvicellular reticular nucleusipsiPCRt1
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd1.5
Dorsal column nucleiipsiDCN2
Nucleus ZipsiZ2
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Lateral hypothalamic areaipsiLH1
Rostral part of suprachiasmatic nucleus ventrolateral partipsiSCnVLR1
Dorsal thalamusipsiDOR1
Anterior group of the dorsal thalamusipsiATN2
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus medial partipsiPFM2
Posterior thalamic nuclear groupipsiPo2
Submedius thalamic nucleusipsiSub2
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM0
Ventrobasal complex lateral part caudal partipsiVBLC0
Ventrobasal complex medial partipsiVBM1.5
Lateral posterior thalamic nucleusipsiLP1.5
Mediolateral thalamic nucleusipsiMeLT2
Zona incertaipsiZI2
Amygdaloid complexipsiAC1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Caudate putamenipsiCPu1
Dorsal striatumipsiCPud1
Ventral striatumipsiCPuv1
Forelimb motor cortexipsiFMCx1
Medial geniculate nucleus caudal partipsiMGc2
Medial geniculate nucleus dorsal partipsiMGD0
Medial geniculate nucleus medial partipsiMGM0
Medial geniculate nucleus ventral partipsiMGV0
Mesencephalic reticular formationcontraMRF1
Parvicellular reticular nucleuscontraPCRt1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Medial septal nucleuscontraMS1
Substantia innominatacontraSI1
Lateral hypothalamic areacontraLH1
Dorsal thalamuscontraDOR2
Anterior group of the dorsal thalamuscontraATN2.5
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF2
Submedius thalamic nucleuscontraSub2
Ventrobasal complex lateral part caudal partcontraVBLC2
Mediolateral thalamic nucleuscontraMeLT2.5
Amygdaloid complexcontraAC1
Globus palliduscontraGP1
Ventral pallidumcontraVP1
Caudate putamencontraCPu1
Dorsal striatumcontraCPud1
Ventral striatumcontraCPuv1
Forelimb motor cortexcontraFMCx2
Superior cervical ganglionipsiAutoSCeG3

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR1
Superior colliculus deep layersipsiSCd1
Peduncularpontine nucleusipsiPPN-0.5
Retrorubral nucleusipsiRR1
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Pedunculopontine tegmental nucleus pars compactaipsiPPNC1
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC2
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Ventral reticular formationipsiVRF2
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus caudal partipsiPNC3
Peribrachial regionipsiPBR2
Cuneiforme nucleusipsiCnF-0.5
Koelliker Fuse nucleusipsiKF1
Parabrachial nucleus lateral crescentipsiPBlc1
Medial parabrachial nucleus external partipsiMPBE1
Medial parabrachial nucleus medial divisionipsiMPBM1
Parabrachial nucleus ventral partipsiPBV1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt2
Subnucleus reticularis dorsalis dorsal partipsiSRDD2
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC2
Ambiguus nucleusipsiAmb-0.5
Spinal trigeminal nucleus caudal partipsiSp5C2
Vestibular nucleiipsiVnc1.5
Medial vestibular nucleus caudal partipsiMVeP2
Lateral vestibular nucleusipsiLVe3
Inferior vestibular nucleusipsiIVN2
Nucleus of the solitary tract ventrolateral partipsiSolVL1
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb2
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa2
Raphe pallidus nucleus rostral partipsiRParo2
Rostral ventrolateral medullaipsiRVLM-0.5
Cuneate nucleus caudal partipsiCuC1
Cuneate nucleus rostral partipsiCuRo0.5
Middle part of cuneate nucleusipsiCuM0.5
GracileipsiGra0.5
Nucleus of BischoffipsiNBi1.5
Nucleus interfascicularis hypoglossiipsiNIFH2
Lateral paragigantocellular nucleusipsiLPGi2
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH-0.5
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Ventrolateral paraventricular hypothalamic nucleusipsiPaVM1
Paraventricular hypothalamic nucleusipsiPa-0.5
Middle third of the paraventricular hypothalamic nucleus dorsal groupipsiPaMitD2
Middle third of the paraventricular hypothalamic nucleus dorsolateral regionipsiPaMitDL2
Middle third of the paraventricular hypothalamic nucleus ventral groupipsiPaMitV2
Paraventricular hypothalamic nucleus dorsomedial partipsiPaDoM-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo-0.5
Paraventricular hypothalamic nucleus periventricular cell layeripsiPapvcL1
Paraventricular hypothalamic nucleus rostral third dorsal border regionipsiPaRordb-0.5
Paraventricular hypothalamic nucleus rostral third dorsal partipsiPaRord-0.5
Paraventricular hypothalamic nucleus rostral third dorsolateral partipsiPaRordL0.5
Paraventricular hypothalamic nucleus rostral third laterallyipsiPaRorL0.5
Paraventricular hypothalamic nucleus rostral third ventrallyipsiPaRorV0.5
Paraventricular hypothalamic nucleus rostrocaudal extentipsiParc-0.5
Paraventricular hypothalamic nucleus ventrolateral partipsiPaVL-0.5
Paraventricular nucleus medial partipsiPame1
Paraventricular hypothalamic nucleus triangular area between the ventral and dorsal groupipsiPaTVD0
Subparaventricular zone of the hypothalamusipsiSPa1
Anterolateral regionipsiMMna2
A11 dopamine cellsipsiA112
Retrochiasmatic areaipsiRCh1
Subparafascicular thalamic nucleus dorsal partipsiSPFd2
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus peripheral partipsiSPFpe1
Subparafascicular thalamic nucleus rostral partipsiSPFr2.5
Subparafascicular thalamic nucleus ventral partipsiSPFv2
Zona incertaipsiZI-0.5
Zona incerta caudal partipsiZIC1
Zona incerta magnocellular partipsiZIMag2
Cerebral cortexipsiCEC1
Agranular insular cortexipsiAI1
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS20
Spinal cordipsiMES-0.5
Red nucleuscontraR3
Red nucleus dorsomedial partcontraRdm3
Red nucleus rostral partcontraRnRo3
Red nucleus ventrolateral partcontraRveL-0.5
Ventrolateral tegmental areacontraVLTg2
Koelliker Fuse nucleuscontraKF2
Parabrachial nucleus lateral crescentcontraPBlc2
Medial parabrachial nucleus external partcontraMPBE2
Medial parabrachial nucleus medial divisioncontraMPBM2
Gigantocellular reticular nucleuscontraGi2
Medial vestibular nucleus caudal partcontraMVeP2
Inferior vestibular nucleuscontraIVN2
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Retrochiasmatic areacontraRCh0.5
Cerebral cortex layer 5contraCCL53
Frontal association cortex layer 5contraFrALL53
Primary somatosensory cortexcontraS12
Secondary somatosensory cortex layer 5contraS2L53
Somatomotoric regions layer 5contraSMRL53

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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