University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layers T1 right


Abbreviation
SCLT1
Color       
Superior regionsThoracal segment 1

SynonymsAbbr.Language
Spinal cord layers T1SCLT1Eng

SubregionsSide
Area X T1right
Dorsal horn T1right
Ventral horn T1right

Output to

NameSideAbbr.WeightDetails
Lateral parabrachial nucleus lateral partcontraLPBL1
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Medial septal nucleuscontraMS1
Substantia innominatacontraSI1
Lateral hypothalamic areacontraLH1
Dorsal thalamuscontraDOR2
Submedius thalamic nucleuscontraSub0
Amygdaloid complexcontraAC1
Globus palliduscontraGP1
Ventral pallidumcontraVP1
Caudate putamencontraCPu1
Dorsal striatumcontraCPud1
Ventral striatumcontraCPuv1
CerebellumipsiCERE2
Lateral parabrachial nucleus lateral partipsiLPBL0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Nucleus ZipsiZ2
Medial septal nucleusipsiMS1
Substantia innominataipsiSI1
Lateral hypothalamic areaipsiLH1
Dorsal thalamusipsiDOR1
Submedius thalamic nucleusipsiSub0
Ventrobasal complex medial partipsiVBM1
Lateral posterior thalamic nucleusipsiLP1
Amygdaloid complexipsiAC1
Globus pallidusipsiGP1
Ventral pallidumipsiVP1
Caudate putamenipsiCPu1
Dorsal striatumipsiCPud1
Ventral striatumipsiCPuv1
Intercalated nucleus T1ipsiICLT1-0.5
Intermediolateral cell column pars funicularis T1ipsiILFT1-0.5
Autonomic cell column T1ipsiAutoT1-0.5
Superior cervical ganglionipsiAutoSCeG3
Bulbocavernosus muscleipsiMuscBCV-10
Ischiocavernosus muscleipsiMuscicav-10

Input from

NameSideAbbr.WeightDetails
Red nucleuscontraR2
Red nucleus rostral partcontraRnRo3
Lateral hypothalamic areacontraLH-0.5
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Retrochiasmatic areacontraRCh0.5
Zona incertacontraZI-0.5
Cerebral cortexcontraCEC2
Red nucleusipsiR1
Dorsolateral pontine tegmentumipsiDLPT-0.5
Peduncularpontine nucleusipsiPPN-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA7-0.5
Locus coeruleusipsiLC3
Locus coeruleus caudal part ventral partipsiLCcV1
Ventral half of the locus coeruleusipsiLCvh-0.5
Prepositus nucleusipsiPr2
Medial reticular formationipsiRFm-0.5
Midline reticular formationipsiMiRF1
Peribrachial regionipsiPBR-0.5
Koelliker Fuse nucleusipsiKF1
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt-0.5
Medullary reticular nucleus ventral partipsiMdV2
Nucleus of the trapezoid bodyipsiTz-0.5
Subcoeruleus nucleusipsiSubC-0.5
C1 adrenaline cellsipsiC12
C2 adrenaline cellsipsiC22
C3 adrenaline cellsipsiC32
Ambiguus nucleusipsiAmb3
Motor trigeminal nucleusipsiMo53
Vestibular nucleiipsiVnc2
Medial vestibular nucleusipsiMVe2
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract ventrolateral partipsiSolVL1
Raphe nucleiipsiRAN-0.5
Caudal raphe nucleiipsiRANc-0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa2
Rostral ventrolateral medullaipsiRVLM3
A1 noradrenergic cellsipsiA11
Inferior olive rostral partipsiIOR3
Paragigantocellular reticular nucleusipsiPGi3
Lateral paragigantocellular nucleusipsiLPGi2
Ventral medulla oblongataipsiVMeO-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area rostral partipsiLHro3
Dorsal hypothalamic areaipsiDA2
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Ventrolateral paraventricular hypothalamic nucleusipsiPaVM1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus parvicellular division periventricular partipsiPaPP1
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa3
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP3
Paraventricular nucleus of the hypothalamus magnocellular division posterior magnocellular partipsiPaAMp1
Paraventricular hypothalamic nucleusipsiPa2
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag2
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD3
Paraventricular nucleus ventromedial parvocellular partipsiPaVMp3
Paraventricular hypothalamic nucleus periventricular partipsiPapv3
Paraventricular hypothalamic nucleus rostral third dorsal partipsiPaRord-0.5
Paraventricular hypothalamic nucleus rostral third dorsal border regionipsiPaRordb-0.5
Paraventricular hypothalamic nucleus rostral third laterallyipsiPaRorL0.5
Paraventricular hypothalamic nucleus rostral third ventrallyipsiPaRorV0.5
Paraventricular hypothalamic nucleus rostral third dorsolateral partipsiPaRordL0.5
Paraventricular nucleus dorsal partipsiPaDo2.5
Paraventricular nucleus medial partipsiPame1
Paraventricular hypothalamic nucleus dorsomedial partipsiPaDoM-0.5
Middle third of the paraventricular hypothalamic nucleus ventral groupipsiPaMitV2
Middle third of the paraventricular hypothalamic nucleus dorsal groupipsiPaMitD2
Middle third of the paraventricular hypothalamic nucleus dorsolateral regionipsiPaMitDL2
Paraventricular hypothalamic nucleus rostrocaudal extentipsiParc-0.5
Paraventricular hypothalamic nucleus ventrolateral partipsiPaVL-0.5
Paraventricular hypothalamic nucleus periventricular cell layeripsiPapvcL1
Paraventricular hypothalamic nucleus triangular area between the ventral and dorsal groupipsiPaTVD0
Subparaventricular zone of the hypothalamusipsiSPa1
Retrochiasmatic areaipsiRCh2
Paraventricular thalamic nucleusipsiPV2
Ventromedial thalamic nucleus dorsolateral partipsiVMDL3
Zona incertaipsiZI2
Zona incerta rostral partipsiZIR2
Region around the fornixipsiraf-0.5
Somatomotoric regionsipsiSMR3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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