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Rat connectome



C1 adrenaline cells right


Abbreviation
C1
Color       
Superior regionsAdrenaline cell group

SynonymsAbbr.Language
C1 noradrenergic group Eng
C1 cell group  
C1 adrenaline cellsC1Eng
C1 area of Reis Eng

SubregionsSide
C1 adrenaline cells caudal partright
C1 adrenaline cells rostral partright
C1 adrenaline cells rostromedial partright
Lateral C1 cell groupright
C1 adrenaline cells medial partright

Output to

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR0
Substantia nigra A9contraSN0.5
Ventral tegmental area A10 caudomedial partcontraVTACM0
Interfascicular nucleuscontraIF1
Ventral tegmental area A10 medial partcontraVTAM0.5
Locus coeruleuscontraLC1
Reticular systemcontraRF-10
Dorsal motor nucleus of vaguscontra10-10
Rostral linear nucleus of the raphecontraRLi0.5
Central raphe nucleuscontraCRN0.5
Rostral ventrolateral medullacontraRVLM-10
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]contraPaMP-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Paraventricular hypothalamic nucleus magnocellular divisioncontraPaMag-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partcontraPaMagP-0.5
Paraventricular hypothalamic nucleus parvocellular divisioncontraPavPo-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisioncontraPavPoD-0.5
Paraventricular hypothalamic nucleus periventricular partcontraPapv-0.5
Supraoptic nucleus [Supraoptic region]contraSO-0.5
Supraoptic nucleus ventral part [Supraoptic region]contraSOV-0.5
A8 dopamine cells retrorubral groupcontraRRF0.5
A8 dopamine cells retrorubral group medial partcontraRRFm0
Retrochiasmatic areacontraRCh0.5
Stria medullaris of the thalamuscontrasm0
Fornixcontraf0
Anteroventral ventricular regioncontra3Vav-0.5
Spinal cord layer 3 C5contraSCL3C51
Spinal cord layer 1 C5contraSCL1C51
Spinal cord layer 2 C5contraSCL2C51
Intermediolateral cell column T1contraIMLT1-0.5
Thoracal segment 2contraT23
Intermediolateral cell column T2contraIMLT2-0.5
Thoracal segment 3contraT33
Intermediolateral cell column T3contraIMLT32
Thoracal segment 4contraT43
Intermediolateral cell column T4contraIMLT4-0.5
Intermediolateral cell column T5contraIMLT52
Intermediolateral cell column T7contraIMLT71.5
Thoracal segment 8contraT83
Thoracal segment 9contraT93
Intermediolateral cell column T9contraIMLT92
Intermediolateral cell column T10contraIMLT10-0.5
Intermediolateral cell column T11contraIMLT112
Intermediolateral cell column T12contraIMLT12-0.5
Intermediolateral cell column T13contraIMLT13-0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR0.5
Substantia nigra A9ipsiSN4
Ventral tegmental area A10 caudomedial partipsiVTACM0.5
Interfascicular nucleusipsiIF1
Ventral tegmental area A10 medial partipsiVTAM1
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC3
Dorsal reticular formationipsiDRF-10
Subcoeruleus nucleusipsiSubC-10
C1 adrenaline cellsipsiC1-0.5
Ambiguus nucleusipsiAmb-10
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract medial partipsiSolM3
Visceral nucleus of the nucleus of the tractus solitariusipsiVSol3
Dorsal motor nucleus of vagusipsi10-10
Dorsal raphe nucleusipsiDR-0.5
Rostral linear nucleus of the rapheipsiRLi0.5
Central raphe nucleusipsiCRN0.5
Raphe obscurus nucleusipsiROb-10
Raphe pallidus nucleusipsiRPa-10
Ventral lateral medulla oblongataipsiMVL-0.5
Caudal ventrolateral medullaipsiCVLM-10
Rostral ventrolateral medulla sympathetic premotor neuronsipsiRVLMspn-0.5
A1 noradrenergic cellsipsiA1-10
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Median eminence subependymal layeripsiMEseL-10
Median eminence intermediate layeripsiMEimL-0.5
Medial septal nucleusipsiMS2
Substantia innominataipsiSI1
Medial preoptic areaipsiMPA1
Median preoptic nucleusipsiMnPO-0.5
Ventrolateral preoptic nucleusipsiVLPO1
Ventromedial preoptic nucleusipsiVMPO-0.5
Tuberomammillary nucleus dorsomedial partipsiTBMdm-0.5
Ventral tuberomammillary nucleusipsiVTM-0.5
Glia limitans ventral to the ventral tuberomammillary nucleusipsiTuMgL-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral hypothalamic areaipsiLH-10
Lateral hypothalamic area perifornical partipsiPFx3
Lateral hypothalamus adjacent to the ventral tuberomammillary nucleusipsiLHVTM-0.5
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Dorsomedial hypothalamic areaipsiDMHyA-0.5
Dorsomedial hypothalamic nucleus ventral partipsiDMV-10
Subparaventricular zoneipsiSuPZ3
Medial basal hypothalamusipsiMBH-0.5
Arcuate nucleus ventral portionipsiArcV-10
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR4
Paraventricular hypothalamic nucleus dorsal partipsiPaD3
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP3
Paraventricular hypothalamic nucleus lateral parvocellular partipsiLPPa2
Paraventricular hypothalamic nucleus medial parvocellular part ventral partipsiMPPav2
Paraventricular hypothalamic nucleusipsiPa4
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP-0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo3
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Paraventricular nucleus medial parvicellular part dorsal zoneipsiPVHmpdo3
Paraventricular hypothalamic nucleus periventricular partipsiPapv3
Paraventricular nucleus anterior partipsiPaan3
Mid paraventricular hypothalamic nucleusipsiMiPa3
Periventricular hypothalamic nucleusipsiPe-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO3
Nucleus properipsiSOnP-0.5
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV-0.5
Lateral mammillary nucleusipsiLM-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventromedial partipsiPMvm-0.5
Supramammillar nucleus lateral partipsiSuML-0.5
A8 dopamine cells retrorubral groupipsiRRF4
A8 dopamine cells retrorubral group medial partipsiRRFm0.5
Retrochiasmatic areaipsiRCh0.5
Paraventricular thalamic nucleusipsiPV-0.5
Reuniens thalamic nucleus most ventral partipsiRemV3
Stria medullaris of the thalamusipsism0
Retinal ganglion cellsipsiRETg-0.5
Central amygdaloid nucleusipsiCe2
Medial amygdaloid nucleusipsiMe2
Fornixipsif-2
Anteroventral ventricular regionipsi3Vav-0.5
Intermediolateral cell columnipsiIML2
Spinal cord layer 3 C5ipsiSCL3C51
Spinal cord layer 1 C5ipsiSCL1C51
Spinal cord layer 2 C5ipsiSCL2C51
Thoracal segment 1ipsiT13
Intermediolateral cell column T1ipsiIMLT1-0.5
Sympathetic preganglionic cell column T1ipsiSpIMLT1-0.5
Intermediomedial cell column T1ipsiIMMT1-0.5
Spinal cord layers T1ipsiSCLT12
Thoracal segment 2ipsiT23
Intermediolateral cell column T2ipsiIMLT2-0.5
Sympathetic preganglionic cell column T2ipsiSpIMLT2-0.5
Intermediomedial cell column T2ipsiIMMT2-0.5
Spinal cord layers T2ipsiSCLT22
Thoracal segment 3ipsiT33
Intermediolateral cell column T3ipsiIMLT33
Sympathetic preganglionic cell column T3ipsiSpIMLT3-0.5
Intermediomedial cell column T3ipsiIMMT3-0.5
Spinal cord layers T3ipsiSCLT32
Thoracal segment 4ipsiT43
Intermediolateral cell column T4ipsiIMLT4-0.5
Intermediomedial cell column T4ipsiIMMT4-0.5
Spinal cord layers T4ipsiSCLT42
Thoracal segment 5ipsiT53
Intermediolateral cell column T5ipsiIMLT53
Intermediomedial cell column T5ipsiIMMT5-0.5
Thoracal segment 6ipsiT63
Intermediolateral cell column T6ipsiIMLT62
Intermediomedial cell column T6ipsiIMMT6-0.5
Thoracal segment 7ipsiT73
Intermediolateral cell column T7ipsiIMLT72
Intermediomedial cell column T7ipsiIMMT7-0.5
Thoracal segment 8ipsiT83
Intermediolateral cell column T8ipsiIMLT82
Intermediomedial cell column T8ipsiIMMT8-0.5
Thoracal segment 9ipsiT93
Intermediolateral cell column T9ipsiIMLT93
Intermediomedial cell column T9ipsiIMMT9-0.5
Lower thoracic spinal cordipsiTSegLo-0.5
Intermediolateral cell column T10ipsiIMLT102
Intermediomedial cell column T10ipsiIMMT10-0.5
Intermediolateral cell column T11ipsiIMLT113
Intermediomedial cell column T11ipsiIMMT11-0.5
Intermediolateral cell column T12ipsiIMLT12-0.5
Intermediomedial cell column T12ipsiIMMT12-0.5
Intermediolateral cell column T13ipsiIMLT13-0.5
Intermediomedial cell column T13ipsiIMMT13-0.5
Thoracic intermediolateral cell columnipsiTSegiL-0.5
Intermediate lamina of the thoracic spinal cordipsiTSegim-0.5
Central autonomic nucleus of lumbar segment 1ipsiCAAL1-10
Central autonomic nucleus of lumbar segment 2ipsiCAAL2-10
Central autonomic nucleus of lumbar segment 3ipsiCAAL3-10
Central autonomic nucleus of lumbar segment 4ipsiCAAL4-10
Lumbar segments intermediolateral partipsiLSegIML-0.5
Tracheal parasympathetic preganglionic neuronsipsiTPPN4
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-0.5
ColonipsiOrgsColonS3
Liver sideipsiOrgsLivs1
Liver lobeipsiOrgsLivL3
Adrenal glandipsiADRE1
Thyroid glandipsiOrgThyroid1
Gastrocnemius muscleipsiMuscGC-10
Lumbar epaxial musclesipsiMuscLep-0.5
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
OvaryipsiOrgOvar-10
Pancreas sideipsiOrgsPancs-0.5
Extrathoracic tracheaipsiOrgsTrasEx-10

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG-0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract dorsal partcontraSolD-0.5
Nucleus of the solitary tract lateral partcontraSolL-0.5
Nucleus of the solitary tract subpostremal partcontraSolsp-0.5
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
Rostral ventrolateral medullacontraRVLM3
Inferior olivecontraIO3
Retrotrapezoid nucleuscontraRTN1
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd-0.5
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Lateral hypothalamic area [Lateral zone mammillary level]contraLHLZM-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Periventricular zonecontraPVZ0
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Periaqueductal grayipsiPAG-0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray rostral partipsiPAGvlr2
Lateral tegmental nucleusipsiLTN-0.5
Intermediate reticular nucleus alpha partipsiIRtA3
Koelliker Fuse nucleusipsiKF-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Medullary reticular nucleusipsiMdD3
C1 adrenaline cellsipsiC1-0.5
Area postremaipsiAP3
Caudal part of the spinal trigeminal nucleus caudal part layer 1ipsiSp5CCL1-0.5
Caudal part of the spinal trigeminal nucleus caudal part layer 5ipsiSp5CCL5-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I0.5
Spinal trigeminal nucleus oral partipsiSp5O3
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract commissural partipsiSolC1
Nucleus of the solitary tract dorsal partipsiSolD-0.5
Nucleus of the solitary tract dorsomedial partipsiSolDM1
Nucleus of the solitary tract intermediate partipsiSolIM-0.5
Nucleus of the solitary tract lateral partipsiSolL2
Nucleus of the solitary tract medial part caudal zoneipsiSolMc-0.5
Nucleus of the solitary tract subpostremal partipsiSolsp-0.5
Raphe nucleiipsiRAN3
Raphe magnus nucleusipsiRMg-0.5
Raphe magnus nucleus caudal partipsiRMgc3
Raphe obscurus nucleusipsiROb-0.5
Raphe obscurus nucleus rostral partipsiRObr3
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medullaipsiCVLM-0.5
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
Rostral ventrolateral medullaipsiRVLM3
Ventral respiratory groupipsiVReG-0.5
Retrotrapezoid nucleusipsiRTN3
Rostral ventral respiratory groupipsiRVRG-0.5
Dorsomedial hypothalamic nucleusipsiDMHy1
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR2
Lateral hypothalamic area dorsal partipsiLHd1
Lateral hypothalamic area ventral partipsiLHAvp1
Lateral hypothalamic area [Lateral zone mammillary level]ipsiLHLZM-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Periventricular zoneipsiPVZ0
Paraventricular hypothalamic nucleusipsiPa3
Caudal portion of the paraventricular nucleus medial parvocellular partipsiPaMepC1
Supraoptic nucleus [Supraoptic region]ipsiSO0
Area around supraoptic nucleusipsiSoRa0
Medial part of the caudal perifornical areaipsiPeFCM0.5
Lateral part of the caudal perifornical areaipsiPeFCL1
Central amygdaloid nucleusipsiCe2
Anterior ethmoidal nerveipsiaemn-0.5
Vagus nerveipsiAutoV-0.5
Posteroorbital whisker follicleipsiPoOrWf-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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