University of Rostock

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Rat connectome



Ventral horn T1 right


Abbreviation
VHT1
Color       
Superior regionsSpinal cord layers T1

SynonymsAbbr.Language
Ventral horn T1VHT1Eng

SubregionsSide
Intermediate zone T1right
Interneuron groups of layer 9 T1right
Motoneuron groups of layer 9 T1right
Spinal cord layer 9 T1right

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Cuneiforme nucleuscontraCnF-0.5
Caudal two third of the lateral reticular nucleuscontraCaTTLRt0.5
Lateral reticular nucleus magnocellular partcontraLRtMC2
Lateral reticular nucleus parvicellular partcontraLRtPC2
Rostral third of the lateral reticular nucleuscontraRTLRt0
Lateral reticular nucleus subtrigeminal partcontraLRtS50
Lateral reticular nucleus ventral partcontraLRtV2
Lateral reticular nucleus ventrolateral partcontraLRtVL-0.5
Retrotrapezoid nucleuscontraRTN0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT-0.5
Central grayipsiCG1
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Tegmental areaipsiTGA-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL2
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF-0.5
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC2
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Lateral reticular nucleus ventral partipsiLRtV-0.5
Nucleus of the solitary tractipsiSol-0.5
Dorsal column nucleiipsiDCN2
Retrotrapezoid nucleusipsiRTN1
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Paraventricular hypothalamic nucleusipsiPa0.5
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO0.5
Lumbar segment 1ipsiL1-1
Median nerveipsimen-2
Radial nerveipsirad-2
Ulnar nerveipsiuln-2
StomachipsiOrgsStomS-0.5
Forelimb extensor digitorum communisipsiMuscFoEDC-0.5
SpleenipsiOrgSPL-0.5
Pancreas sideipsiOrgsPancs-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Lateral pontine tegmentumcontraLPTG-0.5
Mesencephalic locomotor regioncontraMLR-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
Interstitial nucleus of CajalcontraInC0.5
A5 noradrenaline cellscontraA50.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC2
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus alpha partcontraGiA0.5
Gigantocellular reticular nucleus ventral partcontraGiV0.5
Medial medullary reticular nucleuscontraMMdD1
Medial subnucleus reticularis ventraliscontraMSRV1
Subcoeruleus nucleuscontraSubC0.5
Lateral vestibular nucleuscontraLVe1
Medial part of the commissural subnucleuscontraMSolC-0.5
Caudal ventrolateral medullacontraCVLM-0.5
Lateral paragigantocellular nucleuscontraLPGi1
Cerebral cortexcontraCEC1
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA71
Locus coeruleusipsiLC2
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Medial medullary reticular nucleusipsiMMdD1
Medial subnucleus reticularis ventralisipsiMSRV1
Subcoeruleus nucleusipsiSubC1
Spinal vestibular nucleusipsiSpVe-0.5
Superior vestibular nucleusipsiSuVe-0.5
Lateral vestibular nucleusipsiLVe1
Nucleus of the solitary tractipsiSol-0.5
Medial part of the commissural subnucleusipsiMSolC-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Raphe obscurus nucleus ventral partipsiRObV-0.5
Raphe pallidus nucleusipsiRPa-0.5
Caudal ventrolateral medullaipsiCVLM-0.5
Inferior olive dorsal nucleusipsiIOD-0.5
Lateral paragigantocellular nucleusipsiLPGi3
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Neurons in the lateral funiculus cervical level C3ipsiNLFC3-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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