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Rat connectome



Field CA1 of hippocampus layer stratum oriens left


Abbreviation
CA1or
Color       
Superior regionsField CA1 of hippocampus layers

SynonymsAbbr.Language
Field CA1 of hippocampus layer stratum oriensCA1or 
Field CA1 of hippocampus layer stratum oriensCA1L2so 
 CA1soEng

SubregionsSide
Field CA1 of hippocampus layer deep part of the stratum oriensleft
Field CA1 of hippocampus layer stratum oriens double projection cellsleft
Field CA1 of hippocampus layer stratum oriens retrohippocampal neuronsleft
Field CA1 of hippocampus layer stratum oriens non-pyramidal cellsleft

Output to

NameSideAbbr.WeightDetails
Magnocellular basal forebrain neuronal complexipsiMBFNC-0.5
Medial septal nucleusipsiMS1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Accumbens nucleus shellipsiAcbSh1
Medial accumbensipsiAcbM-0.5
Ventromedial accumbensipsiAcbVM-0.5
Hilus of the dentate gyrusipsiHil-0.5
Field CA1 of hippocampus dorsal layer stratum oriensipsiCA1dL2so-0.5
Field CA1 of hippocampus dorsal layer stratum pyramidaleipsiCA1dL3sp-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Field CA1 of hippocampus layer stratum radiatum non-principal cellsipsiCA1L5srnpc1
Field CA1 of hippocampus layer stratum oriens double projection cellsipsiCA1L2sodpc-0.5
Field CA1 of hippocampus layer stratum oriens retrohippocampal neuronsipsiCA1L2sorhn-0.5
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Subiculum dorsal partipsiSd-0.5
Ventral hippocampusipsiHIPPv-0.5
Medial entorhinal cortexipsiMEnt-10
Retrosplenial dysgranular cortexipsiRSdys0.5
Retrosplenial granular cortexipsiRSGra1
Lateral prefrontal cortexipsilPFC0.5
Ventral medial prefrontal cortexipsivmPFC0.5
Lateral septal nucleusipsiLS2
Lateral septal nucleus dorsal partipsiLSD-0.5
Medial septal nucleuscontraMS-0.5
Dorsal hippocampuscontraHIPPd-0.5
Field CA1 of hippocampuscontraCA13
Lateral septal nucleuscontraLS-0.5

Input from

NameSideAbbr.WeightDetails
Ventral tegmental area A10ipsiVTA2
Midline reticular formationipsiMiRF2
Raphe nucleiipsiRAN1
Median raphe nucleusipsiMnR3
Magnocellular basal forebrain neuronal complexipsiMBFNC-0.5
Medial septum dorsal band complexipsiMSDB3
Diagonal band of BrocaipsiDBB-0.5
Nucleus of the diagonal band of Broca dorsal partipsiVDBD2
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS3
Substantia innominataipsiSI-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv1
Basal nucleus intermediate divisionipsiBnci1
Basal nucleus magnocellular partipsiBmc1
Basal nucleus parvicellular part caudomedial regionipsiBpccm2
Basal nucleus parvicellular part lateral portionipsiBpcL1
Posterior basolateral nucleusipsiBLP2
Posterior basomedial nucleusipsiBMP1
Ventromedial part of the lateral nucleusipsiLaVM1
Dorsal hippocampusipsiHIPPd3
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Hilus of the dentate gyrusipsiHil0.5
Field CA1 of hippocampusipsiCA1-0.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Field CA1 of hippocampus layer stratum radiatum non-principal cellsipsiCA1L5srnpc1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus layer stratum pyramidal cellsipsiCA1L3spc-0.5
Field CA1 of hippocampus layer stratum oriens double projection cellsipsiCA1L2sodpc-0.5
Field CA1 of hippocampus layer stratum oriens retrohippocampal neuronsipsiCA1L2sorhn-0.5
Field CA1 of hippocampus ventral layer stratum pyramidal cellsipsiCA1vL3spc-0.5
Field CA1 of hippocampus splenial one-thirdipsiCA1ot1
Field CA1 of hippocampus septal poleipsiCA1sp1
Field CA2 of hippocampusipsiCA2-0.5
Field CA2 of hippocampus layer stratum pyramidale primary axon of pyramidal cellsipsiCA2L3spapy-0.5
Field CA2 of hippocampus layer stratum pyramidale secondary axon of pyramidal cellsipsiCA2L3sapy-0.5
Field CA3 of hippocampusipsiCA3-0.5
Distal field CA3 of hippocampusipsiDCA33
Field CA3 of hippocampus layer stratum radiatumipsiCA3rad-0.5
Field CA3 of hippocampus layer stratum pyramidaleipsiCA3pyr-0.5
Field CA3 of hippocampus layer stratum pyramidale pyramidal neuronsipsiCA3L3spy3
Field CA3 of hippocampus mid septotemporal portionipsiCA3mst3
Field CA3 of hippocampus midtransverse portionipsiCA3mt3
Field CA3a of hippocampus pyramidal cell layeripsiCA3aLpy-0.5
Field CA3a of hippocampus pyramidal cell layer pyramidal cellsipsiCA3aLpyc-0.5
Field CA3a of hippocampus pyramidal cell layer primary axon of pyramidal cellsipsiCA3aLpapyc-0.5
Field CA3a of hippocampus pyramidal cell layer secondary axon of pyramidal cellsipsiCA3aLsapyc-0.5
Field CA3c of hippocampusipsiCA3c3
Field CA3c of hippocampus ventral partipsiCA3cV0.5
Proximal field CA3 of hippocampusipsiPCA30.5
Subiculum layer 5ipsiSuL5-0.5
Lateral entorhinal cortexipsiLEnt1
Medial entorhinal cortexipsiMEnt1
Medial entorhinal cortex superficial layersipsiMEntLyS-0.5
Persisting white matter subplate neuronsipsiPWMSN-0.5
Septal regionipsiSER1
Ventral tegmental area A10contraVTA1
HippocampuscontraHIPP3
Anterior one-third hippocampal formationcontraAHCfot4
Field CA1 of hippocampus septal polecontraCA1sp1
Field CA2 of hippocampus layer stratum secondary axon of commissural fibers of pyramidale pyramidal cellscontraCA2L3scfpy-0.5
Field CA3 of hippocampuscontraCA33
Field CA3c of hippocampuscontraCA3c1
Field CA3a of hippocampus pyramidal cell layer secondary axon from commissural fibers of pyramidal cellscontraCA3aLcfpyc-0.5
Proximal part of field CA3b of hippocampuscontraCA3bp1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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