University of Rostock

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Rat connectome



Central gray mesencephalic part intercollicular level left


Abbreviation
CGMint
Color       
Superior regionsCentral gray mesencephalic part

SynonymsAbbr.Language
Central gray mesencephalic part intercollicular levelCGMintEng

Output to

NameSideAbbr.WeightDetails
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Lateral posterior thalamic nucleuscontraLP1
Laterodorsal thalamic nucleuscontraLD1

Input from

NameSideAbbr.WeightDetails
Substantia nigra lateral partipsiSNL-1
Substantia nigra reticular partipsiSNR-1
Substantia nigra reticular part dorsolateral tieripsiSNRDL-1
Substantia nigra reticular part dorsomedial tieripsiSNRDM-1
Ventral tegmental area A10ipsiVTA-1
Lateral cerebellar nucleusipsiCERL1
Pons caudal partipsiPca3
Pons oral partipsiPor3
Pontine reticular nucleusipsiPRN-0.5
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Lateral reticular nucleusipsiLRt-0.5
Medullary reticular nucleus ventral partipsiMdV-0.5
Supragenual nucleusipsiSGe-0.5
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb0
Raphe pallidus nucleusipsiRPa0
Diagonal band of BrocaipsiDBB0.5
Lateral preoptic areaipsiLPO0.5
Medial preoptic areaipsiMPA0.5
Lateral hypothalamic areaipsiLH-1
Anterior hypothalamic areaipsiAHA0.5
Posterior hypothalamic areaipsiPHA-1
Ventromedial hypothalamic nucleus anterior partipsiVMHA3
Ventromedial hypothalamic nucleus central partipsiVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM0.5
Ventromedial hypothalamic nucleus posterior partipsiVMHP-1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1.5
Arcuate nucleusipsiArc1.5
Paraventricular hypothalamic nucleusipsiPa1
Premammillary nucleus dorsal partipsiPMD-1
Premammillary nucleus ventral partipsiPMV-1
Supramammillar nucleusipsiSuM0.5
Zona incertaipsiZI-1
Nucleus of the fields of ForelipsiF-1
Lateral habenular nucleusipsiLHb1
Medial habenular nucleusipsiMHb1
Crus cerebri dorsolateral part to the most dorsal tipipsicpdldT-1
Central amygdaloid nucleusipsiCe1
Central amygdaloid nucleus caudal divisionipsiCeCD0.5
Central amygdaloid nucleus medial divisionipsiCeM1
Anterior amygdaloid areaipsiAA0.5
Medial amygdaloid nucleusipsiMe0.5
Fornixipsif-1
Cerebral cortex layer 5ipsiCCL5-1
Cingulate cortex area 2ipsiCg2-1
Prelimbic cortexipsiPrL-1
Retrolimbic areaipsiReLA-1
Frontal cortex area 2ipsiFr2-1
Frontal cortex area 3ipsiFr3-1
Posterior orbital cortexipsiOrCP-1
Orbital prefrontal cortexipsioPFC-1
Septal regionipsiSER-1
Spinal cord layer 5 C1ipsiSCL5C11
Spinal cord layer 3 C1ipsiSCL3C11
Spinal cord layer 4 C1ipsiSCL4C11
Spinal cord layer 7 C1ipsiSCL7C11
Spinal cord layer 8 C1ipsiSCL8C11
Spinal cord layer 5 C2ipsiSCL5C21
Spinal cord layer 3 C2ipsiSCL3C21
Spinal cord layer 4 C2ipsiSCL4C21
Spinal cord layer 7 C2ipsiSCL7C21
Spinal cord layer 8 C2ipsiSCL8C21
Spinal cord layer 5 C3ipsiSCL5C31
Spinal cord layer 3 C3ipsiSCL3C31
Spinal cord layer 4 C3ipsiSCL4C31
Spinal cord layer 7 C3ipsiSCL7C31
Spinal cord layer 8 C3ipsiSCL8C31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Lumbar segment 6ipsiL61
Sacral segment 1ipsiSa11
Interposed cerebellar nucleicontraICN-0.5
Lateral cerebellar nucleuscontraCERL3
Medial cerebellar nucleus lateral partcontraMedL-0.5
Dorsolateral reticular formationcontraDLRF-0.5
Pontine reticular nucleuscontraPRN-0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt-0.5
Medullary reticular nucleus ventral partcontraMdV-0.5
Supratrigeminal nucleuscontraSu51
Principal sensory trigeminal nucleuscontraPr53
Spinal trigeminal nucleus interpolar part caudalcontraSp5Ic-0.5
Spinal trigeminal nucleus interpolar part dorsomedial partcontraSp5IDM-0.5
Dorsomedial portion of the spinal trigeminal nucleus oral partcontraSp5ODM-0.5
Pontine raphe nucleuscontraPnR-0.5
Cuneate nucleuscontraCu1
Lateral cervical nucleus C1contraLatCC11
Spinal cord layer 5 C1contraSCL5C13
Spinal cord layer 3 C1contraSCL3C13
Spinal cord layer 4 C1contraSCL4C13
Spinal cord layer 7 C1contraSCL7C13
Spinal cord layer 8 C1contraSCL8C13
Lateral cervical nucleus C2contraLatCC21
Spinal cord layer 5 C2contraSCL5C23
Spinal cord layer 3 C2contraSCL3C23
Spinal cord layer 4 C2contraSCL4C23
Spinal cord layer 7 C2contraSCL7C23
Spinal cord layer 8 C2contraSCL8C23
Lateral cervical nucleus C3contraLatCC31
Spinal cord layer 5 C3contraSCL5C33
Spinal cord layer 3 C3contraSCL3C33
Spinal cord layer 4 C3contraSCL4C33
Spinal cord layer 7 C3contraSCL7C33
Spinal cord layer 8 C3contraSCL8C33
Lateral cervical nucleus C4contraLatCC41
Lateral cervical nucleus C5contraLatCC51
Lateral cervical nucleus C6contraLatCC61
Lateral cervical nucleus C7contraLatCC71
Lateral cervical nucleus C8contraLatCC81
Lumbar segment 4contraL43
Lumbar segment 5contraL53
Lumbar segment 6contraL63
Sacral segment 1contraSa13

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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