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Rat connectome



Spinal cord layer 4 C1 left


Abbreviation
SCL4C1
Color       
Superior regionsNucleus proprius C1

SynonymsAbbr.Language
Spinal cord layer 4 C1SCL4C1Eng

Output to

NameSideAbbr.WeightDetails
Middle meningeal arteryipsimime3
Central gray mesencephalic part intercollicular levelipsiCGMint1
Periaqueductal grayipsiPAG2
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Dorsal reticular formationipsiDRF-0.5
Isthmic reticular formationipsiisRT1
Magnocellular reticular nucleusipsiNRMC1
Mesencephalic reticular formationipsiMRF1
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleusipsiCnF2
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL2
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt2
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp2
Caudomedial part of the lateral reticular nucleusipsiLRtcm2
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt2
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Facial nucleusipsi7-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Medial vestibular nucleus caudal partipsiMVeP1
Medial vestibular nucleus magnocellular partipsiMVeMC-0.5
Medial vestibular nucleus parvicellular partipsiMVePC-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract caudal partipsiSolca-0.5
Medial part of the commissural subnucleusipsiMSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Caudal ventrolateral medullaipsiCVLM1
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Paragigantocellular reticular nucleus medial partipsiPGiM-0.5
Tuberomammillary nucleusipsiTuM2
Dorsomedial hypothalamic nucleusipsiDMHy2
Dorsal regionipsiDHR-0.5
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH2
Anterior hypothalamic areaipsiAHA2
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc2
Paraventricular hypothalamic nucleusipsiPa2
Periventricular hypothalamic nucleusipsiPe2
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus [Supraoptic region]ipsiSO2
Mammillary bodyipsiCMAM2
Intralaminar nuclei of the dorsal thalamusipsiILM2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF2
Lateral group of the dorsal thalamusipsiLAT-0.5
Posterior thalamic nuclear groupipsiPo2
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB1
Medial thalamic zoneipsiMTZ-0.5
Spinothalamic tractipsistt-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Intermediomedial cell column L1ipsiIMML12
Lumbar segment 2ipsiL23
Intermediomedial cell column L2ipsiIMML22
Lumbar segment 3ipsiL33
Intermediomedial cell column L3ipsiIMML32
Lumbar segment 4ipsiL43
Intermediomedial cell column L4ipsiIMML42
Lumbar segment 5ipsiL53
Intermediomedial cell column L5ipsiIMML52
Dorsal horn L5ipsiDHL50.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL51
Lumbar segment 6ipsiL63
Intermediomedial cell column L6ipsiIMML62
Dorsal horn L6ipsiDHL60.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL61
Sacral segment 1ipsiSa13
Dorsal horn S1ipsiDHS10.5
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
MesencephaloncontraMEC0.5
Central gray mesencephalic part intercollicular levelcontraCGMint3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Central nucleus of the inferior colliculuscontraCIC3
External cortex of the inferior colliculuscontraECIC1
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG2
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Magnocellular reticular nucleuscontraNRMC3
Mesencephalic reticular formationcontraMRF-0.5
Deep mesencephalic nucleuscontraDpMe2
Pontine reticular nucleus caudal partcontraPNC1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB2
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL1.5
Parabrachial nucleus dorsolateral partcontraPBDL1.5
Parabrachial nucleus medialcontraPBnMe2
Parabrachial nucleus superior lateralcontraPBSL1.5
Gigantocellular reticular nucleuscontraGi3
Lateral reticular nucleuscontraLRt3
Caudomedial part of the lateral reticular nucleuscontraLRtcm0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Subcoeruleus nucleuscontraSubC1
Spinal vestibular nucleuscontraSpVe-0.5
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Medial vestibular nucleus parvicellular partcontraMVePC-0.5
Lateral vestibular nucleuscontraLVe-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Tuberomammillary nucleuscontraTuM2
Dorsomedial hypothalamic nucleuscontraDMHy2
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Anterior hypothalamic areacontraAHA2
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Posterior hypothalamic areacontraPHA2
Ventromedial hypothalamic nucleuscontraVMH2
Arcuate nucleuscontraArc2
Paraventricular hypothalamic nucleuscontraPa3
Periventricular hypothalamic nucleuscontraPe2
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
Mammillary bodycontraCMAM2
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Suprageniculate thalamic nucleuscontraSG2
Mediodorsal thalamic nucleuscontraMD2
Submedius thalamic nucleuscontraSub1
Ventral posterior thalamic complexcontraVPT3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN-0.5
Posterior intralaminar thalamic nucleuscontraPIL2
Medial thalamic zonecontraMTZ-0.5
Posterior groupcontraPTG-0.5
Triangular portion of the posterior nuclear groupcontraPTGtri-0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT1
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Spinothalamic tractcontrastt-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Ventral funiculuscontravf-2
Ventrolateral funiculuscontravLF-2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Spinal cord layers T2contraSCLT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL22
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Dorsal horn L5contraDHL50.5
Lumbar segment 6contraL61
Dorsal horn L6contraDHL60.5
Sacral segment 1contraSa11
Dorsal horn S1contraDHS10.5
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41

Input from

NameSideAbbr.WeightDetails
Middle meningeal arteryipsimime-0.5
Adventitia of the middle meningeal arteryipsimimea3
Superficial temporal arteryipsista3
Superior dura sinusipsisds-0.5
Adventitia of the superior dura sinusipsiasds-0.5
Central grayipsiCG1
Red nucleus magnocellular partipsiRMC3
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Mandibular region of the trigeminal ganglionipsi5GnMa0.5
Maxillary region of the trigeminal ganglionipsi5GnV2-0.5
Ophthalmic region of the trigeminal ganglionipsi5GnOP0
Medial vestibular nucleus caudal partipsiMVeP3
Raphe magnus nucleusipsiRMg-0.5
Cuneate nucleusipsiCu-0.5
Cuneate nucleus dorsal partipsiCuD-0.5
External cuneate nucleusipsiECu-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Sensory regionsipsiSR-0.5
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion C1ipsiDRGC1-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C7ipsiDRGC73
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Dorsal horn T6ipsiDHT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Adventitia of the superior dura sinuscontraasds-0.5
Superior colliculus lateral partcontraSCL-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Deep mesencephalic nucleus medial partcontraDpMeM-0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleuscontraGi0.5
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Trigeminal ganglioncontra5Gn3
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nervecontra5GnMaEm3
Caudal area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnROM3
Superficial part of the trigeminal ganglioncontra5GnS3
Medial vestibular nucleus caudal partcontraMVeP3
Nucleus interfascicularis hypoglossicontraNIFH1
Zona incerta medial partcontraZIm-0.5
Dorsolateral funiculuscontradlft-2
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Sensory regionscontraSR-0.5
Primary somatosensory cortexcontraS13
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5contraS1BFcdysL53
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6contraS1BFcdysL63
Posterior dygranular zone between whisker and trunk representation layer 5contraS1pdyL53
Posterior dygranular zone between whisker and trunk representation layer 6contraS1pdyL63
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Dorsal horn C1contraDHC1-0.5
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Dorsal horn T6contraDHT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Lumbar segment 1contraL1-0.5
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
C1 C2 anastomosis suboccipital nerve dorsal spinal nerve C2ipsic1c2a-0.5
Median nerveipsimen3
CorneaipsiOrgsCorn2
EyelidipsiOrgsEL-0.5
Face surfaceipsiOrgBSface-0.5
Auriculotemporal vibrissaipsiFVFCaut-0.5
Splenius capitis muscleipsiMuscSpCa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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