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Rat connectome



Spinal cord layer 7 C1 right


Abbreviation
SCL7C1
Color       
Superior regionsIntermediate zone C1

SynonymsAbbr.Language
Spinal cord layer 7 C1SCL7C1Eng

SubregionsSide
Spinal cord layer 7 central region C1right

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part intercollicular levelcontraCGMint3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Paraflocculus ventral partcontraPFlv-0.5
Cerebellar lobule 3contraCERL3-0.5
Cerebellar lobule 4contraCERL41.5
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Posterior lobe vermiscontraPLVERM-0.5
FlocculuscontraFl-0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO3
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF-0.5
Lateral parabrachial nucleus lateral partcontraLPBL3
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp0.5
Caudomedial part of the lateral reticular nucleuscontraLRtcm1
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt0.5
Lateral reticular nucleus lateral partcontraLRtL1
Lateral reticular nucleus rostral partcontraLRtr0.5
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd1
Facial nucleuscontra7-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Medial vestibular nucleus parvicellular partcontraMVePC-0.5
Lateral vestibular nucleuscontraLVe-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Raphe pallidus nucleuscontraRPa1
Dorsal column nucleicontraDCN-0.5
Cuneate nucleuscontraCu3
Inferior olivecontraIO3
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Retrotrapezoid nucleuscontraRTN1
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL2.5
Paracentral thalamic nucleuscontraPC2.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo3
Submedius thalamic nucleuscontraSub1
Ventrobasal complexcontraVB2
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Intralaminar nucleicontraILN3
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Medial thalamic zonecontraMTZ-0.5
Pretectal regioncontraPRT-0.5
Lateral funiculuscontralf-2
Spinothalamic tractcontrastt-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Ventral funiculuscontravf-2
Ventrolateral funiculuscontravLF-2
Cervical segment 1contraCS11.5
Cervical segment 2contraCS21.5
Cervical segment 3contraCS31.5
Cervical segment 4contraCS41.5
Cervical segment 5contraCS51.5
Intermediomedial cell column C5contraIMMC51
Cervical segment 6contraCS61.5
Cervical segment 7contraCS71.5
Spinal cord layer 9 C7contraSCL9C7-0.5
Cervical segment 8contraCS81.5
Thoracal segment 1contraT11.5
Thoracal segment 2contraT21.5
Spinal cord layers T2contraSCLT23
Thoracal segment 3contraT31.5
Thoracal segment 4contraT41.5
Thoracal segment 5contraT51.5
Thoracal segment 6contraT61.5
Thoracal segment 7contraT71.5
Thoracal segment 8contraT81.5
Thoracal segment 9contraT91.5
Thoracal segment 10contraT101.5
Thoracal segment 11contraT111.5
Thoracal segment 12contraT121.5
Thoracal segment 13contraT131.5
Lumbar segment 1contraL11.5
Lumbar segment 2contraL21.5
Lumbar segment 3contraL31.5
Lumbar segment 4contraL41.5
Area X L4contraSCL10L43
Spinal cord layer 8 L4contraSCL8L43
Lumbar segment 5contraL51.5
Lumbar segment 6contraL61.5
Sacral segment 1contraSa11.5
Sacral segment 2contraSa21.5
Sacral segment 3contraSa31.5
Sacral segment 4contraSa41.5
Central gray mesencephalic part intercollicular levelipsiCGMint1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Paraflocculus ventral partipsiPFlv-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL3
Cerebellar lobule 4ipsiCERL41
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
FlocculusipsiFl-0.5
Reticular systemipsiRF-0.5
Isthmic reticular formationipsiisRT1
Magnocellular reticular nucleusipsiNRMC-0.5
Medial pontomedullary reticular formationipsiMPomRF-0.5
Mesencephalic reticular formationipsiMRF1
Deep mesencephalic nucleusipsiDpMe-0.5
Deep mesencephalic nucleus intermediateipsiDpMei2
Deep mesencephalic nucleus lateral partipsiDpMeL2
Deep mesencephalic nucleus medial partipsiDpMeM2
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleus lateral partipsiLPBL3
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp2
Caudolateral part of the lateral reticular nucleusipsiLRtCL1
Caudomedial part of the lateral reticular nucleusipsiLRtcm3
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt2
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC-0.5
Lateral reticular nucleus parvicellular partipsiLRtPC-0.5
Lateral reticular nucleus rostral partipsiLRtr2
Subnucleus reticularis dorsalisipsiSRD3
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Ambiguus nucleusipsiAmb0.5
Facial nucleusipsi7-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus magnocellular partipsiMVeMC-0.5
Medial vestibular nucleus parvicellular partipsiMVePC-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract lateral partipsiSolL2
Nucleus of the solitary tract medial partipsiSolM2
Raphe pallidus nucleusipsiRPa1
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu1
Cuneate nucleus rostral partipsiCuRo-0.5
Gracile nucleus principal partipsiGr-0.5
External cuneate nucleusipsiECu-0.5
Inferior oliveipsiIO0.5
Inferior olive dorsal nucleusipsiIOD1
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Paragigantocellular reticular nucleus medial partipsiPGiM-0.5
Retrotrapezoid nucleusipsiRTN2
Intralaminar nuclei of the dorsal thalamusipsiILM2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF2
Lateral group of the dorsal thalamusipsiLAT-0.5
Posterior thalamic nuclear groupipsiPo3
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL3
Ventral posteromedial thalamic nucleusipsiVPM3
Intralaminar nucleiipsiILN3
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Medial thalamic zoneipsiMTZ-0.5
Spinothalamic tractipsistt-2
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS23
Cervical segment 3ipsiCS33
Cervical segment 4ipsiCS43
Intermediomedial cell column C4ipsiIMMC42
Cervical segment 5ipsiCS53
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT22
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Intermediomedial cell column L1ipsiIMML12
Lumbar segment 2ipsiL23
Intermediomedial cell column L2ipsiIMML22
Lumbar segment 3ipsiL33
Intermediomedial cell column L3ipsiIMML32
Lumbar segment 4ipsiL43
Intermediomedial cell column L4ipsiIMML42
Area X L4ipsiSCL10L43
Spinal cord layer 8 L4ipsiSCL8L43
Lumbar segment 5ipsiL53
Intermediomedial cell column L5ipsiIMML52
Lumbar segment 6ipsiL63
Intermediomedial cell column L6ipsiIMML62
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Cervical oesophaguscontraOrgsOesC1
Cervical oesophagusipsiOrgsOesC2
Thyrohyoid muscleipsiMuscthyro0.5
Pancreas sideipsiOrgsPancs-0.5
Trachea sideipsiOrgsTras1

Input from

NameSideAbbr.WeightDetails
Red nucleuscontraR0.5
Red nucleus dorsalcontraRDO-0.5
Red nucleus dorsomedial partcontraRdm-0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Red nucleus ventrolateral partcontraRveL-0.5
Superior colliculuscontraSC-0.5
Superior colliculus lateral partcontraSCL-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Superior colliculus deep layerscontraSCd-0.5
Lateral cerebellar nucleuscontraCERL1
Medial cerebellar nucleuscontraMed3
A5 noradrenaline cellscontraA50.5
Locus coeruleuscontraLC2
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Deep mesencephalic nucleus medial partcontraDpMeM-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC1
Parabrachial nucleuscontraPB-0.5
Gigantocellular reticular nucleuscontraGi1
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Medial medullary reticular nucleuscontraMMdD3
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Medial vestibular nucleuscontraMVe-0.5
Nucleus of the solitary tract caudal partcontraSolca2
Medial part of the commissural subnucleuscontraMSolC2
Cerebral cortexcontraCEC3
Lateral agranular prefrontal cortexcontraAGl0.5
Forelimb motor cortexcontraFMCx3
Primary somatosensory cortexcontraS12
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Dorsal horn T6contraDHT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Lumbar segment 1contraL1-0.5
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Central grayipsiCG1
Red nucleusipsiR1
Red nucleus dorsalipsiRDO-0.5
Red nucleus magnocellular partipsiRMC3
Laterodorsal tegmental nucleusipsiLDTg-0.5
Interstitial nucleus of CajalipsiInC-0.5
Lateral cerebellar nucleusipsiCERL0.5
Medial cerebellar nucleusipsiMed1
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA72
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC1
Parabrachial nucleusipsiPB-0.5
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subnucleus reticularis dorsalisipsiSRD3
Medial medullary reticular nucleusipsiMMdD3
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Medial vestibular nucleusipsiMVe-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tract caudal partipsiSolca3
Medial part of the commissural subnucleusipsiMSolC3
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract ventral partipsiSolV3
Nucleus of the solitary tract ventrolateral partipsiSolVL3
Nucleus of the solitary tract rapidly adapting pulmonary stretch receptor second order neuronsipsiRAR-0.5
Raphe magnus nucleusipsiRMg-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Lateral hypothalamic areaipsiLH1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C1ipsiDRGC1-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Dorsal horn T6ipsiDHT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Sternomastoid nerveipsismn2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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