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Rat connectome



Spinal cord layer 3 C1 left


Abbreviation
SCL3C1
Color       
Superior regionsNucleus proprius C1

SynonymsAbbr.Language
Spinal cord layer 3 C1SCL3C1Eng
Subjacent dorsal hornSDHEng

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part intercollicular levelipsiCGMint1
Periaqueductal grayipsiPAG2
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Pontine medullary junctionipsiPMJ-0.5
Deep mesencephalic nucleusipsiDpMe2
Pontine reticular nucleus caudal partipsiPNC1
Cuneiforme nucleusipsiCnF2
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL2
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus medialipsiPBnMe1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt3
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp2
Caudomedial part of the lateral reticular nucleusipsiLRtcm2
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt2
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD2
Medullary reticular nucleus dorsal partipsiMdDd3
Spinal trigeminal nucleus caudal part dorsal divisionipsiSp5Cd1
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract lateral partipsiSolL2
Caudal ventrolateral medullaipsiCVLM1
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Tuberomammillary nucleusipsiTuM1
Dorsomedial hypothalamic nucleusipsiDMHy1
Dorsal regionipsiDHR-0.5
Preoptic anterior regionipsiPAreg1
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH0.5
Anterior hypothalamic areaipsiAHA1
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA1
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleusipsiPa1.5
Periventricular hypothalamic nucleusipsiPe1
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
Mammillary bodyipsiCMAM1
ThalamusipsiT0.5
Lateral group of the dorsal thalamusipsiLAT0
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB1
Medial thalamic zoneipsiMTZ0
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Lateral cervical nucleus C1ipsiLatCC1-0.5
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS21
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS31
Lateral cervical nucleus C3ipsiLatCC3-0.5
Cervical segment 4ipsiCS41
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Spinal cord layers T2ipsiSCLT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Dorsal horn L5ipsiDHL50.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Dorsal horn L6ipsiDHL60.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Dorsal horn S1ipsiDHS10.5
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC0.5
Central gray mesencephalic part intercollicular levelcontraCGMint3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG1
Central nucleus of the inferior colliculuscontraCIC3
External cortex of the inferior colliculuscontraECIC1
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG2
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Deep mesencephalic nucleuscontraDpMe2
Pontine reticular nucleus caudal partcontraPNC1
Cuneiforme nucleuscontraCnF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL2
Parabrachial nucleus central lateral partcontraPBCeL1.5
Parabrachial nucleus dorsolateral partcontraPBDL1.5
Parabrachial nucleus medialcontraPBnMe2
Parabrachial nucleus superior lateralcontraPBSL1.5
Lateral reticular nucleuscontraLRt3
Caudomedial part of the lateral reticular nucleuscontraLRtcm0.5
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleus dorsal partcontraMdDd0.5
Subcoeruleus nucleuscontraSubC1
Spinal trigeminal nucleus caudal part dorsal divisioncontraSp5Cd1
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL0.5
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Tuberomammillary nucleuscontraTuM2
Dorsomedial hypothalamic nucleuscontraDMHy2
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH1
Anterior hypothalamic areacontraAHA2
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Posterior hypothalamic areacontraPHA2
Ventromedial hypothalamic nucleuscontraVMH2
Arcuate nucleuscontraArc2
Paraventricular hypothalamic nucleuscontraPa3
Periventricular hypothalamic nucleuscontraPe2
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
Mammillary bodycontraCMAM2
ThalamuscontraT3
Lateral group of the dorsal thalamuscontraLAT-0.5
Posterior thalamic nuclear groupcontraPo3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Suprageniculate thalamic nucleuscontraSG2
Mediodorsal thalamic nucleuscontraMD2
Ventral posterior thalamic complexcontraVPT3
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Posterior intralaminar thalamic nucleuscontraPIL2
Medial thalamic zonecontraMTZ-0.5
Posterior groupcontraPTG-0.5
Triangular portion of the posterior nuclear groupcontraPTGtri-0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT1
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL22
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Dorsal horn L5contraDHL50.5
Lumbar segment 6contraL61
Dorsal horn L6contraDHL60.5
Sacral segment 1contraSa11
Dorsal horn S1contraDHS10.5
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41

Input from

NameSideAbbr.WeightDetails
Middle meningeal arteryipsimime-0.5
Adventitia of the middle meningeal arteryipsimimea3
Superficial temporal arteryipsista3
Superior dura sinusipsisds-0.5
Adventitia of the superior dura sinusipsiasds-0.5
Central grayipsiCG1
Red nucleus magnocellular partipsiRMC3
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD-0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Mandibular region of the trigeminal ganglionipsi5GnMa0.5
Ophthalmic region of the trigeminal ganglionipsi5GnOP1
Medial vestibular nucleus caudal partipsiMVeP3
Raphe magnus nucleusipsiRMg-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Zona incerta rostromedial partipsiZIrm0
Cerebral cortexipsiCEC3
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion C1ipsiDRGC1-0.5
Dorsal root ganglion C2ipsiDRGC21
Dorsal root ganglion C3ipsiDRGC30.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Adventitia of the superior dura sinuscontraasds-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Deep mesencephalic nucleus medial partcontraDpMeM-0.5
Cuneiforme nucleuscontraCnF-2
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Trigeminal ganglioncontra5Gn3
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nervecontra5GnMaEm3
Caudal area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnROM3
Superficial part of the trigeminal ganglioncontra5GnS3
Medial vestibular nucleus caudal partcontraMVeP3
Nucleus interfascicularis hypoglossicontraNIFH1
Dorsolateral funiculuscontradlft-2
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm-0.5
Primary somatosensory cortexcontraS13
Central dysgranular zone between E4 whisker and forelimb barrel field layers 5contraS1BFcdysL53
Central dysgranular zone between E4 whisker and forelimb barrel field layers 6contraS1BFcdysL63
Posterior dygranular zone between whisker and trunk representation layer 5contraS1pdyL53
Posterior dygranular zone between whisker and trunk representation layer 6contraS1pdyL63
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Dorsal horn C1contraDHC1-0.5
Cutaneous branch of the mylohyoid nerveipsicmyhy3
Inferior alveolar nerveipsiialv-0.5
Auriculotemporal nerveipsi5V3Aute-0.5
Median nerveipsimen3
Mental nerveipsiment-0.5
Mylohyoid nerveipsimyhy3
Mental nervecontrament-0.5
Inferior alveolar nervecontraialv-0.5
CorneaipsiOrgsCorn2
EyelidipsiOrgsEL-0.5
Face surfaceipsiOrgBSface-0.5
Intervibrissal furipsiiVFu0
Vibrissal follicle complex A1ipsiVFCA10
Vibrissal follicle complex A4ipsiVFCA4-2
Vibrissal follicle complex D1ipsiVFCD1-0.5
Auriculotemporal vibrissaipsiFVFCaut-0.5
Splenius capitis muscleipsiMuscSpCa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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