University of Rostock

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Rat connectome



Supragenual nucleus left


Abbreviation
SGe
Color       
Superior regionsCell groups of the paramedian tract

SynonymsAbbr.Language
 SG 
Nucleus suprageniculatus Eng
Supragenualis nucleus Eng
Nucleus supragenualis Eng
Supragenual nucleusSGeEng

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part intercollicular levelipsiCGMint-0.5
Nuclei of the lateral lemniscusipsiNLL0
Superior colliculusipsiSC0
Intermediate gray layer of the superior colliculusipsiInG0
Superior colliculus medial partipsimSC0
Central tegmental field dorsal partipsiTGACd2
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg1.5
Dorsal tegmental nucleusipsiDTg3
Dorsal tegmental nucleus central partipsiDTgC-0.5
Dorsal tegmental nucleus ventromedial partipsiDTgVM-0.5
Pedunculopontine tegmental nucleusipsiPPTg0
Paraflocculus ventral partipsiPFlv2
Simple lobuleipsiSim0
Cerebellar lobule 4ipsiCERL42
Cerebellar lobule 5ipsiCERL52
Cerebellar lobule 9ipsiCERL90.5
FlocculusipsiFl3
Locus coeruleusipsiLC1
Supragenual nucleusipsiSGe0
Lateral mammillary nucleusipsiLM2
Reuniens thalamic nucleus caudomedial divisionipsiRecm2
Amygdaloid complexipsiAC-0.5
Nuclei of the lateral lemniscuscontraNLL0
Inferior colliculuscontraICOL0
Superior colliculuscontraSC0
Intermediate gray layer of the superior colliculuscontraInG0
Superior colliculus medial partcontramSC4
Central tegmental field dorsal partcontraTGACd3
Laterodorsal tegmental nucleuscontraLDTg3
Ventral tegmental nucleuscontraVTg3
Dorsal tegmental nucleuscontraDTg4
Dorsal tegmental nucleus central partcontraDTgC3
Dorsal tegmental nucleus pericentral partcontraDTgP3
Pedunculopontine tegmental nucleuscontraPPTg0
Paraflocculus ventral partcontraPFlv2
Simple lobulecontraSim0
Cerebellar lobule 4contraCERL42
Cerebellar lobule 5contraCERL52
Cerebellar lobule 9contraCERL90.5
FlocculuscontraFl3
Locus coeruleuscontraLC2
Prepositus nucleuscontraPr1
Sphenoid nucleuscontraSph3
Supragenual nucleuscontraSGe3
Dorsal raphe nucleuscontraDR0.5
Median raphe nucleuscontraMnR0.5
Superior central raphe nucleuscontraCS0.5
Lateral mammillary nucleuscontraLM2
Interpeduncular nucleuscontraIP0.5
Medial rectus muscleipsiMuscEEyeMR-0.5
Musculus masseteripsiMuscMass1
Medial rectus musclecontraMuscEEyeMR-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0.5
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0.5
Ventromedial periaqueductal grayipsiVMPAG-2
Ventral tegmental area A10ipsiVTA-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Dorsal tegmental nucleus central partipsiDTgC0
Dorsal tegmental nucleus dorsal partipsiDTgD3
Dorsal tegmental nucleus pericentral partipsiDTgP0
Ventromedial part of the ventral aprt of the dorsal tegmental nucleusipsiDTgVVM3
Nucleus incertus pars dissipataipsiNId1
Prepositus nucleusipsiPr-3
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus caudal partipsiPNC3
Supragenual nucleusipsiSGe0
Superior vestibular nucleusipsiSuVe0
Medial vestibular nucleusipsiMVe3
Medial vestibular nucleus magnocellular partipsiMVeMC0
Medial vestibular nucleus parvicellular partipsiMVePC0
Lateral vestibular nucleusipsiLVe0
Dorsal raphe nucleusipsiDR3
Paragigantocellular reticular nucleusipsiPGi0.5
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR0.5
Lateral hypothalamic area dorsal partipsiLHd0
Lateral hypothalamic area ventral partipsiLHAvp0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0
Periventricular zoneipsiPVZ0.5
Medial part of the caudal perifornical areaipsiPeFCM0
Lateral part of the caudal perifornical areaipsiPeFCL0
Basolateral amygdaloid nucleusipsiBL-0.5
Gray matter of the floor of the 4th ventricleipsiGMF4V3
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Dorsal tegmental nucleuscontraDTg3
Dorsal tegmental nucleus central partcontraDTgC3
Dorsal tegmental nucleus pericentral partcontraDTgP3
Prepositus nucleuscontraPr-3
Supragenual nucleuscontraSGe3
Superior vestibular nucleuscontraSuVe0
Medial vestibular nucleuscontraMVe0.5
Medial vestibular nucleus magnocellular partcontraMVeMC0
Medial vestibular nucleus parvicellular partcontraMVePC0
Lateral vestibular nucleuscontraLVe0
Paragigantocellular reticular nucleuscontraPGi-3
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd0
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM0
Periventricular zonecontraPVZ-0.5
Medial part of the caudal perifornical areacontraPeFCM0
Lateral part of the caudal perifornical areacontraPeFCL0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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