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Rat connectome



Spinal cord layer 5 C1 left


Abbreviation
SCL5C1
Color       
Superior regionsDeep dorsal horn C1

SynonymsAbbr.Language
Spinal cord layer 5 C1SCL5C1Eng
Neck of the dorsal horn C1 Eng

SubregionsSide
Spinal cord layer 5 lateral part C1left
Spinal cord layer 5 medial part C1left
Spinal cord layer 5 dorsal half C1left
Spinal cord layer 5 ventral part C1left

Output to

NameSideAbbr.WeightDetails
Middle meningeal arteryipsimime1
Central gray mesencephalic part intercollicular levelipsiCGMint1
Periaqueductal grayipsiPAG-0.5
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG3
Inferior colliculusipsiICOL-0.5
Paraflocculus ventral partipsiPFlv-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Anterior lobeipsiAnL2
Cerebellar lobule 4ipsiCERL41
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
FlocculusipsiFl-0.5
Reticular systemipsiRF-0.5
Dorsal reticular formationipsiDRF-0.5
Isthmic reticular formationipsiisRT1
Magnocellular reticular nucleusipsiNRMC1
Medial pontomedullary reticular formationipsiMPomRF-0.5
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus lateral partipsiLPBL3
Parabrachial nucleus central lateral partipsiPBCeL2
Parabrachial nucleus dorsolateral partipsiPBDL2
Parabrachial nucleus superior lateralipsiPBSL2
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp2
Caudomedial part of the lateral reticular nucleusipsiLRtcm3
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt2
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Subnucleus reticularis dorsalisipsiSRD3
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Ambiguus nucleusipsiAmb0.5
Facial nucleusipsi7-0.5
Principal sensory trigeminal nucleusipsiPr5-2
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus magnocellular partipsiMVeMC-0.5
Medial vestibular nucleus parvicellular partipsiMVePC-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract caudal partipsiSolca-0.5
Medial part of the commissural subnucleusipsiMSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Raphe pallidus nucleusipsiRPa1
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
Cuneate nucleus rostral partipsiCuRo-0.5
Gracile nucleus principal partipsiGr-0.5
External cuneate nucleusipsiECu-0.5
Inferior olive dorsal nucleusipsiIOD1
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Paragigantocellular reticular nucleus medial partipsiPGiM-0.5
Medial septal nucleusipsiMS-0.5
HypothalamusipsiHYPO1
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
Intralaminar nuclei of the dorsal thalamusipsiILM2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF2
Posterior thalamic nuclear groupipsiPo1
Ventral posterior thalamic complexipsiVPT2
Ventrobasal complexipsiVB1.5
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posteromedial thalamic nucleusipsiVPM1
Intralaminar nucleiipsiILN2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Spinothalamic tractipsistt-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Spinal cord layers C1ipsiSCLC1-2
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT22
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Intermediomedial cell column L1ipsiIMML12
Lumbar segment 2ipsiL23
Intermediomedial cell column L2ipsiIMML22
Lumbar segment 3ipsiL33
Intermediomedial cell column L3ipsiIMML32
Lumbar segment 4ipsiL43
Intermediomedial cell column L4ipsiIMML42
Lumbar segment 5ipsiL53
Intermediomedial cell column L5ipsiIMML52
Dorsal horn L5ipsiDHL52
Lumbar segment 6ipsiL63
Intermediomedial cell column L6ipsiIMML62
Dorsal horn L6ipsiDHL62
Sacral segment 1ipsiSa13
Dorsal horn S1ipsiDHS12
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
MesencephaloncontraMEC0.5
Central graycontraCG-0.5
Central gray mesencephalic part intercollicular levelcontraCGMint3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG3
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Tegmental areacontraTGA-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Paraflocculus ventral partcontraPFlv-0.5
Cerebellar lobule 4contraCERL40.5
Cerebellar lobule 5contraCERL50.5
Cerebellar lobule 7contraCERL70.5
Cerebellar lobule 7acontraCERL7a0.5
Cerebellar lobule 7bcontraCERL7b0.5
Cerebellar lobule 8contraCERL80.5
Cerebellar lobule 9contraCERL90.5
Cerebellar lobule 6contraCERL60.5
Cerebellar lobule 6acontraCERL6a0.5
Cerebellar lobule 6bcontraCERL6b0.5
Cerebellar lobule 6ccontraCERL6c0.5
Cerebellar lobule 6dcontraCERL6d0.5
FlocculuscontraFl-0.5
Magnocellular reticular nucleuscontraNRMC3
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleuscontraPRN-0.5
Pontine reticular nucleus oral partcontraPnO3
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Lateral parabrachial nucleus internal partcontraLPBI-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1.5
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudomedial part of the lateral reticular nucleuscontraLRtcm1
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleus dorsal partcontraMdDd0.5
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Medial vestibular nucleus parvicellular partcontraMVePC-0.5
Lateral vestibular nucleuscontraLVe-0.5
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Raphe pallidus nucleuscontraRPa1
Caudal ventrolateral medullacontraCVLM1
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Medial septal nucleuscontraMS-0.5
HypothalamuscontraHYPO3
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Posterior hypothalamic areacontraPHA1
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL2.5
Paracentral thalamic nucleuscontraPC2.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Submedius thalamic nucleuscontraSub1
Ventral posterior thalamic complexcontraVPT3
Ventrobasal complexcontraVB2
Ventral posterolateral thalamic nucleuscontraVPL3
Ventral posteromedial thalamic nucleuscontraVPM3
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN3
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Lateral funiculuscontralf-2
Spinothalamic tractcontrastt-2
Amygdaloid complexcontraAC-0.5
Globus palliduscontraGP-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc2
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Ventral funiculuscontravf-2
Ventrolateral funiculuscontravLF-2
Cervical segment 7contraCS7-1
Spinal cord layers T2contraSCLT21
Dorsal horn L5contraDHL52
Dorsal horn L6contraDHL62
Dorsal horn S1contraDHS12
Vagus nerveipsiAutoV1
Pancreas sideipsiOrgsPancs-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
Red nucleus dorsalipsiRDO-0.5
Red nucleus magnocellular partipsiRMC3
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Deep mesencephalic nucleus medial partipsiDpMeM-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Mesencephalic trigeminal nucleusipsiMe5-0.5
Dorsal part of spinal trigeminal nucleus oral partipsiSp5OD-0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Mandibular region of the trigeminal ganglionipsi5GnMa0.5
Maxillary region of the trigeminal ganglionipsi5GnV2-0.5
Ophthalmic region of the trigeminal ganglionipsi5GnOP0
Medial vestibular nucleus caudal partipsiMVeP3
Nucleus of the solitary tract caudal partipsiSolca3
Medial part of the commissural subnucleusipsiMSolC3
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract ventral partipsiSolV3
Nucleus of the solitary tract ventrolateral partipsiSolVL3
Raphe magnus nucleusipsiRMg-0.5
Cuneate nucleusipsiCu1
External cuneate nucleusipsiECu-0.5
Rostral ventral respiratory groupipsiRVRG-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx1
Medial agranular prefrontal cortexipsiAGm1
Sensory regionsipsiSR-0.5
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C1ipsiDRGC1-0.5
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Dorsal horn T6ipsiDHT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Red nucleuscontraR0.5
Red nucleus dorsalcontraRDO-0.5
Red nucleus dorsomedial partcontraRdm-0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Red nucleus ventrolateral partcontraRveL-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Superior colliculus deep layerscontraSCd-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Mesencephalic reticular formationcontraMRF-0.5
Deep mesencephalic nucleus medial partcontraDpMeM-0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Spinal trigeminal nucleus caudal partcontraSp5C-0.5
Trigeminal ganglioncontra5Gn3
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nervecontra5GnMaEm3
Caudal area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnCOM3
Rostral area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnROM3
Superficial part of the trigeminal ganglioncontra5GnS3
Medial vestibular nucleus caudal partcontraMVeP2
Nucleus of the solitary tract caudal partcontraSolca2
Medial part of the commissural subnucleuscontraMSolC2
Cuneate nucleuscontraCu1
Nucleus interfascicularis hypoglossicontraNIFH1
Zona incerta medial partcontraZIm-0.5
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Forelimb motor cortexcontraFMCx2
Sensory regionscontraSR-0.5
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Dorsal horn C1contraDHC1-0.5
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Dorsal horn T6contraDHT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Lumbar segment 1contraL1-0.5
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Median nerveipsimen3
Sternomastoid nerveipsismn2
CorneaipsiOrgsCorn2
Auriculotemporal vibrissaipsiFVFCaut-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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