University of Rostock

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Rat connectome



Frontal cortex area 1 left


Abbreviation
Fr1
Color       
Superior regionsFrontal association cortex

SynonymsAbbr.Language
Medial frontal cortex area 8A  
Frontal cortex 1  
Area 8aA8a 
Frontal cortex area 1Fr1Eng
Ventral part of frontal cortex Eng

SubregionsSide
Frontal cortex area 1 caudal partleft
Frontal cortex area 1 layersleft
Frontal cortex area 1 rostrolateral partleft

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic part inferior colliculus levelipsiCGMinf-1
Central gray mesencephalic part superior colliculus levelipsiCGMsc-1
Periaqueductal grayipsiPAG3
Red nucleus magnocellular part rostral sectoripsiRMCro-0.5
Red nucleus parvicellular partipsiROC-0.5
Superior colliculusipsiSC3
Ventrolateral tegmental areaipsiVLTg1
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Pontine nuclei rostromedial partipsiBPNrm-0.5
Pontine reticular nucleusipsiPRN2
Lateral part of the central pontine reticular nucleusipsiNRTPLc0.5
Medial part of the central part pontine reticular nucleusipsiNRTPMc2
Parvicellular reticular nucleusipsiPCRt1
Facial nucleusipsi72
Mesencephalic trigeminal nucleusipsiMe51
Mesencephalic trigeminal nucleus medial partipsiperiMe51
Spinal vestibular nucleusipsiSpVe0.5
Spinal vestibular nucleus rostral partipsiSpVeR-1
Medial vestibular nucleusipsiMVe3
Medial vestibular nucleus caudal partipsiMVeP0.5
Medial vestibular nucleus ventral partipsiMVeV0.5
Lateral vestibular nucleusipsiLVe0.5
Dorsal column nucleiipsiDCN-0.5
Nucleus XipsiX0.5
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO0
Medial preoptic areaipsiMPA0
Anterior hypothalamic nucleus rostral zoneipsiAHnR0
Dorsomedial hypothalamic nucleus anterior partipsiDMA1
Posterior hypothalamic nucleusipsiPH3
Parafascicular thalamic nucleus medial partipsiPFM-0.5
Zona incertaipsiZI3
Zona incerta dorsal partipsiZID0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta ventral partipsiZIV1
Lateral habenular nucleusipsiLHb-0.5
Ventromedial part of the crus cerebriipsivmcp-2
Lateral globus pallidusipsiLGP2
Caudate putamenipsiCPu3
Dorsomedial striatumipsiCPudm3
Medial striatumipsiCPum2
Central striatumipsiCPuce2
Dorsal striatumipsiCPud2
Dorsolateral striatumipsiCPudl3
Ventrolateral striatumipsiCPuvl3
Lateral striatumipsiCPul2
Frontal cortex area 1ipsiFr1-0.5
Frontal cortex area 2ipsiFr21
Parietal cortex posterior areaipsiParP1
Elbow flexion motor cortexipsiEFMCx3
Ankle dorsiflexion motor cortexipsiADFMCx3
Ankle plantar flexion motor cortexipsiAPFMCx3
Hip flexion motor cortexipsiHFMCx3
Orofacial motor cortexipsiOFCx2
Primary somatosensory cortex hindlimb regionipsiS1HL-1
Primary visual cortexipsiV11
Secondary visual cortex lateral areaipsiV2L1
Orbital cortexipsiOrC2
Interpeduncular nucleusipsiIP-0.5
Ventral horn of spinal cordipsiVHMES-0.5
Ventrolateral tegmental areacontraVLTg1
Spinal vestibular nucleuscontraSpVe0.5
Spinal vestibular nucleus rostral partcontraSpVeR0.5
Medial vestibular nucleuscontraMVe0.5
Medial vestibular nucleus caudal partcontraMVeP0.5
Medial vestibular nucleus ventral partcontraMVeV0.5
Lateral vestibular nucleuscontraLVe0.5
Nucleus XcontraX0.5
Dorsomedial hypothalamic nucleus anterior partcontraDMA1
Posterior hypothalamic nucleuscontraPH0.5
Dorsomedial striatumcontraCPudm1
Dorsolateral striatumcontraCPudl2
Ventrolateral striatumcontraCPuvl2
Frontal association cortexcontraFrA3
Frontal cortex area 1contraFr12
Auditory regionscontraAU3
Primary somatosensory cortex forelimb regioncontraS1FL2
Primary somatosensory cortex hindlimb regioncontraS1HL2
Cervical segment 5contraCS53
Cervical segment 6contraCS63
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Ventral horn of spinal cordcontraVHMES3
Hypoglossal nerveipsi12P3
Hypoglossal nervecontra12P1
Bulbospongiosus muscleipsiMuscbsp3
Bulbospongiosus musclecontraMuscbsp3

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Substantia nigra compact part medial-third of the rostral thirdipsiSNCmtrt1
Substantia nigra medial partipsiSNM2
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus rostral partipsiDRr3
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Basal nucleus MeynertipsiB-0.5
Substantia innominataipsiSI-0.5
Anteromedial thalamic nucleusipsiAM2
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Gelatinosus thalamic nucleusipsiG2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh2
Posterior thalamic nuclear groupipsiPo2
Mediodorsal thalamic nucleusipsiMD2
Midline group of the dorsal thalamusipsiMTN2
Ventrolateral thalamic nucleusipsiVL3
Ventral posterolateral thalamic nucleusipsiVPL2
Ventromedial thalamic nucleusipsiVM2
Basal nucleus magnocellular partipsiBmc1.5
Anterior basolateral nucleusipsiBLA4
Basolateral nucleus lateral partipsiBLLP4
Ventral basolateral nucleusipsiBLV-0.5
ClaustrumipsiCl1.5
Dorsolateral part of claustrumipsiCLDL-0.5
Subthalamic nucleusipsiSTh3
Dorsolateral entorhinal cortexipsiDLEnt1
Retrosplenial agranular cortex layer 2ipsiRSAL21
Retrosplenial agranular cortex layer 3ipsiRSAL31
Limbic regionsipsiLR-0.5
Frontal cortex area 1ipsiFr1-0.5
Frontal cortex area 1 caudal partipsiFr1c3
Frontal cortex area 1 layer 5ipsiFr1L52
Frontal cortex area 1 layer 6ipsiFr1L62
Frontal cortex area 1 layer 1ipsiFr1L1-2
Frontal cortex area 1 layer 2ipsiFr1L23
Frontal cortex area 1 layer 4ipsiFr1L4-2
Frontal cortex area 1 layer 3ipsiFr1L33
Frontal cortex area 2ipsiFr23
Frontal cortex area 2 layer 4ipsiFr2L41
Frontal cortex area 2 layer 3ipsiFr2L33
Frontal cortex area 2 layer 1ipsiFr2L11
Frontal cortex area 2 layer 2ipsiFr2L23
Frontal cortex area 2 layer 5ipsiFr2L52
Frontal cortex area 2 layer 6ipsiFr2L62
Frontal cortex area 2 layer 7ipsiFr2La72
Hindleg region of the frontal cortexipsiFrHL3
Parietal cortex area 1ipsiPar12
Parietal cortex area 1 layer 2ipsiPar1L21.5
Parietal cortex area 1 layer 3ipsiPar1L31.5
Parietal cortex area 1 layer 6ipsiPar1L61
Parietal cortex area 2ipsiPar22.5
Parietal cortex area 2 layer 3ipsiPar2L31.5
Parietal cortex area 2 layer 6ipsiPar2L61
Parietal cortex area 2 layer 2ipsiPar2L21.5
Agranular insular cortexipsiAI2
Perirhinal cortexipsiA352
Perirhinal cortex anterior portion layer 3ipsiPRhaL30.5
Perirhinal cortex anterior portion layer 3 to layer 5ipsiPRhaL3L52
Perirhinal cortex anterior portion layer 5 to layer 6ipsiPRhaL5L64
Perirhinal cortex anterior portion layer 6ipsiPRhaL62
Perirhinal cortex layer 2ipsiA35L22
Perirhinal cortex layer 3ipsiA35L32
Perirhinal cortex layer 6ipsiA35L61.5
Rostral half of the forelimb motor cortex layer 2ipsiFMCxrhL23
Rostral half of the forelimb motor cortex layer 3ipsiFMCxrhL33
Rostral half of the forelimb motor cortex layer 4ipsiFMCxrhL43
Rostral half of the forelimb motor cortex layer 5ipsiFMCxrhL53
Rostral half of the forelimb motor cortex layer 6ipsiFMCxrhL63
Trunk region of the lateral agranular frontal cortexipsiAGlt3
Primary somatosensory cortex hindlimb region layer 2ipsiS1HL21
Primary somatosensory cortex hindlimb region layer 3ipsiS1HL31
Primary somatosensory cortex hindlimb region layer 6ipsiS1HL60.5
Dorsolateral part of the primary somatosensory cortexipsiS1DL3
Primary visual cortex layer 6ipsiV1L60.5
Secondary visual cortex medial area layer 3ipsiV2ML32
Secondary visual cortex medial area layer 2ipsiV2ML22
Secondary visual cortex medial area layer 6ipsiV2ML61.5
Secondary visual cortex lateral area layer 2ipsiV2LL22
Secondary visual cortex lateral area layer 3ipsiV2LL32
Secondary visual cortex lateral area layer 6ipsiV2LL61.5
Anterior orbital cortexipsiAOrC-0.5
Central graycontraCG0.5
Central medial thalamic nucleuscontraCM2
Parafascicular thalamic nucleuscontraPF0
Rhomboid thalamic nucleuscontraRh2
Intermediodorsal thalamic nucleuscontraIMD2
Paraventricular thalamic nucleuscontraPV2
Reuniens thalamic nucleuscontraRe2
Subthalamic nucleuscontraSTh0
Retrosplenial agranular cortex layer 6contraRSAL60.5
Retrosplenial agranular cortex layer 2contraRSAL21
Retrosplenial agranular cortex layer 3contraRSAL31
Retrosplenial granular cortex layer 6contraRSGL60.5
Retrosplenial granular cortex layer 2contraRSGL21
Retrosplenial granular cortex layer 3contraRSGL31
Cingulate cortex area 1 layer 2contraCg1L21
Cingulate cortex area 1 layer 3contraCg1L31
Cingulate cortex area 1 layer 6contraCg1L60.5
Frontal cortex area 1contraFr12
Frontal cortex area 1 caudal partcontraFr1c1.5
Frontal cortex area 1 layer 5contraFr1L52
Frontal cortex area 1 layer 6contraFr1L62
Frontal cortex area 1 layer 2contraFr1L23
Frontal cortex area 1 layer 3contraFr1L33
Frontal cortex area 2contraFr22
Frontal cortex area 2 layer 3contraFr2L33
Frontal cortex area 2 layer 2contraFr2L23
Frontal cortex area 2 layer 5contraFr2L52
Frontal cortex area 2 layer 6contraFr2L62
Frontal cortex area 2 layer 7contraFr2La70
Frontal cortex area 3contraFr32
Hindleg region of the frontal cortexcontraFrHL1.5
Rostral half of the forelimb motor cortex layer 2contraFMCxrhL21.5
Rostral half of the forelimb motor cortex layer 3contraFMCxrhL31.5
Rostral half of the forelimb motor cortex layer 4contraFMCxrhL41.5
Rostral half of the forelimb motor cortex layer 5contraFMCxrhL51.5
Rostral half of the forelimb motor cortex layer 6contraFMCxrhL61.5
Trunk region of the lateral agranular frontal cortexcontraAGlt1.5
Primary somatosensory cortex forelimb regioncontraS1FL2
Primary somatosensory cortex hindlimb regioncontraS1HL2
Dorsolateral part of the primary somatosensory cortexcontraS1DL1.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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