University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Septohypothalamic nucleus left


Abbreviation
SHy
Color       
Superior regionsSeptal region

SynonymsAbbr.Language
Septohypothalamic transition area  
Septohypothalamic nucleusSHyEng
Laterally in the most rostral part of the lateral sptum Eng
Area anterior to but not at the level of or caudal to the decussation of the anterior commissure Eng

SubregionsSide
Septohypothalamic nucleus rostral partleft
Septohypothalamic nucleus caudal partleft

Output to

NameSideAbbr.WeightDetails
Peritrigeminal zoneipsiP5-0.5
Nucleus of the solitary tract caudal partipsiSolca2
Dorsal raphe nucleusipsiDR3
Dorsal raphe nucleus caudal partipsiDRC1
Dorsal raphe nucleus central partipsiDRcep1
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus rostral partipsiDRr1
Median raphe nucleusipsiMnR1
Rostral ventral respiratory groupipsiRVRG2.5
Medial preoptic areaipsiMPA-0.5
Medial preoptic nucleusipsiMPO2
Median preoptic nucleusipsiMnPO4
Periventricular zone of the rostral half of the preoptic areaipsiPREOrpv-0.5
Dorsal regionipsiDHR-0.5
Tuberal nucleusipsiTU1
Dorsomedial hypothalamic nucleus anterior partipsiDMA-0.5
Posterior hypothalamic nucleusipsiPH3
Ventromedial hypothalamic nucleusipsiVMH3
Dorsal regions of the capsule of the ventromedial hypothalamic nucleusipsiVMSd3
Medial regions of the capsule of the ventromedial hypothalamic nucleusipsiVMSm3
Paraventricular hypothalamic nucleusipsiPa-0.5
Border of the posterior magnocellular and medial parvocellular subdivision at mid-level of the rostrocaudal extentipsiPabPmmp-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior part caudal levelipsiPaMagPC-0.5
Mammillary bodyipsiCMAM3
Medial mammillary nucleus ventral partipsiMMV1
Supramammillar nucleusipsiSuM3
Dorsochiasmatic areaipsiDRCh2
Paraventricular thalamic nucleusipsiPV-0.5
Zona incerta medial partipsiZIm-0.5
Medial forebrain bundleipsimfb1
Bed nucleus of the stria terminalisipsiBST3
Interpeduncular nucleus rostral subnucleus central partipsiIPRce1
Nucleus of the solitary tract caudal partcontraSolca3
Median raphe nucleuscontraMnR0
Rostral ventral respiratory groupcontraRVRG1
Medial preoptic nucleuscontraMPO-0.5
Paraventricular hypothalamic nucleuscontraPa3
Dorsochiasmatic areacontraDRCh1

Input from

NameSideAbbr.WeightDetails
C3-zoneipsiC3ZO0.5
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId3
Lateral parabrachial nucleus dorsal partipsiLPBD0
Lateral parabrachial nucleus lateral partipsiLPBL0
Rostral parts of the lateral parabrachial nucleus ventral partipsiLPBVR0
Dorsal raphe nucleus caudal partipsiDRC2
Ventral lateral medulla oblongataipsiMVL1
Rostral ventral respiratory groupipsiRVRG1
Medial preoptic nucleusipsiMPO4
Median preoptic nucleusipsiMnPO2
Vascular organ of the lamina terminalisipsiVOLT2
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Anterior hypothalamic areaipsiAHA4
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic nucleus caudal partipsiPHCa1
Posterior hypothalamic nucleus rostral partipsiPHRo2
Ventromedial hypothalamic nucleusipsiVMH2
Arcuate nucleusipsiArc3
Paraventricular hypothalamic nucleus parvicellular part [Periventricular zone anterior region]ipsiPaPc2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP2
Paraventricular hypothalamic nucleus posterior parvocellular partipsiPaPaPo0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP0.5
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
Preoptic periventricular nucleusipsiPePO-0.5
Suprachiasmatic nucleusipsiSCh2
Supramammillar nucleus lateral part lateral subpartipsiSuMLL2
Supramammillar nucleus lateral part medial subpartipsiSuMLM3
Supramammillar nucleus medial partipsiSuMM3
Retrochiasmatic areaipsiRCh2
Dorsochiasmatic areaipsiDRCh3
Paraventricular thalamic nucleus anterior partipsiPVA3
Subfornical organipsiSFO2.5
Medial amygdaloid nucleusipsiMe2
Nucleus incertus pars dissipatacontraNId1
Rostral ventral respiratory groupcontraRVRG1
Medial preoptic nucleuscontraMPO-0.5
Ventromedial hypothalamic nucleuscontraVMH0
Medial amygdaloid nucleuscontraMe1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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