University of Rostock

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Rat connectome



Spinal cord layers L5 left


Abbreviation
SCLL5
Color       
Superior regionsLumbar segment 5

SynonymsAbbr.Language
Spinal cord layers L5SCLL5Eng
Spinal gray matter of segment L5SCLL5Eng

SubregionsSide
Area X L5left
Dorsal horn L5left
Ventral horn L5left

Output to

NameSideAbbr.WeightDetails
Cerebellar cortexipsiCERC2
Anterior lobeipsiAnL-0.5
Cerebellar lobule 8ipsiCERL8-0.5
Cerebellar lobule 9ipsiCERL9-0.5
Lateral parabrachial nucleusipsiLPB0.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Vasodepressor part of caudal midline medulla oblongataipsiCMeObmVd2
Dorsal column nucleiipsiDCN2
External cuneate nucleusipsiECu-0.5
Nucleus ZipsiZ1
ThalamusipsiT2
Dorsal thalamusipsiDOR1
Central medial thalamic nucleusipsiCM0
Centrolateral thalamic nucleusipsiCL0
Parafascicular thalamic nucleusipsiPF0
Submedius thalamic nucleusipsiSub0
Ventrobasal complexipsiVB1
Dorsal ventrobasal complexipsiDVB2
Ventrobasal complex lateral part rostral partipsiVBLR0
Ventrobasal complex medial partipsiVBM1.5
Ventrobasal complex rostral partipsiVBR2
Lateral posterior thalamic nucleusipsiLP1.5
Lateral parabrachial nucleus lateral partcontraLPBL0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Dorsal thalamuscontraDOR2
Central medial thalamic nucleuscontraCM0
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF0
Submedius thalamic nucleuscontraSub2
Ventrobasal complex lateral part rostral partcontraVBLR2
Tibialis anterior muscleipsiMuscTA-0.5
Bulbocavernosus muscleipsiMuscBCV-10

Input from

NameSideAbbr.WeightDetails
Red nucleusipsiR-0.5
Dorsolateral pontine tegmentumipsiDLPT-0.5
Peduncularpontine nucleusipsiPPN-0.5
Laterodorsal tegmental nucleusipsiLDTg3
Sublaterodorsal tegmental nucleusipsiSLD-0.5
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg2
Barringtons nucleusipsiBar2
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Prepositus nucleusipsiPr2
Magnocellular reticular nucleus alpha partipsiNRMCa2
Magnocellular reticular nucleus beta partipsiNRMCb2
Medial reticular formationipsiRFm-0.5
Midline reticular formationipsiMiRF1
Nucleus reticular ventralis pars betaipsiRVb2
Nucleus reticularis ventralis pars alphaipsiRVa2
Peribrachial regionipsiPBR2
Gigantocellular reticular nucleus alpha partipsiGiA2
Lateral reticular nucleusipsiLRt-0.5
Medial subnucleus reticularis ventralisipsiMSRV2
Subcoeruleus nucleusipsiSubC3
Ambiguus nucleusipsiAmb3
Motor trigeminal nucleusipsiMo53
Vestibular nucleiipsiVnc-0.5
Medial vestibular nucleusipsiMVe2
Extra-raphe zoneipsiERZ0.5
Para-raphe zoneipsiPRZ1
Raphe nucleiipsiRAN3
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb2
Raphe obscurus nucleus rostral partipsiRObr2
Raphe pallidus nucleusipsiRPa2
Raphe pallidus nucleus rostral partipsiRParo2
Nucleus interfascicularis hypoglossiipsiNIFH2
Lateral paragigantocellular nucleusipsiLPGi2
Lateral hypothalamic areaipsiLH-0.5
Ventromedial hypothalamic nucleus ventral partipsiVMHV1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Paraventricular hypothalamic nucleus posterior part [Periventricular zone anterior region]ipsiPaPo-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus magnocellular division posterior partipsiPaMagP-0.5
Paraventricular hypothalamic nucleus dorsal parvocellular divisionipsiPavPoD-0.5
Retrochiasmatic areaipsiRCh1
Zona incertaipsiZI-0.5
Cingulate cortexipsiCg-0.5
Frontal association cortex lateral aspectipsiFrALA-0.5
Frontal cortex medial aspectipsiFrAma-0.5
Lateral parietal association cortexipsiLPtA-0.5
Nucleus dorsalis of ClarkeipsiDHMESdc0.5
Lateral spinal nucleusipsiMESLn0
Area X L1ipsiSCL10L11
Spinal cord layer 5 L1ipsiSCL5L12
Spinal cord layer 3 L1ipsiSCL3L10.5
Spinal cord layer 4 L1ipsiSCL4L11
Spinal cord layer 1 L1ipsiSCL1L11
Spinal cord layer 2 L1ipsiSCL2L11
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 8 L1ipsiSCL8L11
Red nucleus rostral partcontraRnRo3
Locus coeruleus ventral partcontraLCv0.5
Ventromedial hypothalamic nucleus ventral partcontraVMHV0.5
Retrochiasmatic areacontraRCh0.5
Lateral agranular prefrontal cortexcontraAGl2
Medial agranular prefrontal cortexcontraAGm1
Secondary somatosensory cortexcontraS21
Area X L1contraSCL10L1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L1-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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