University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Spinal cord layer 2 L1 left


Abbreviation
SCL2L1
Color       
Superior regionsSuperficial dorsal horn L1

SynonymsAbbr.Language
Spinal cord layer 2 L1SCL2L1Eng

SubregionsSide
Spinal cord layer 2 inner part L1left
Spinal cord layer 2 outer part L1left

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG1.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Inferior colliculus lateral partipsiICOLL1
Superior colliculus deep layersipsiSCd1.5
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF0.5
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus rostral partipsiPBro1
Parabrachial nucleus superior lateralipsiPBSL0
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Medullary reticular nucleus ventral partipsiMdV1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM1
Caudal ventrolateral medulla lateral partipsiCVLMl3
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu1
GracileipsiGra1
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa0.5
ThalamusipsiT1
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Posterior thalamic nuclear groupipsiPo1
Posterior thalamic nuclear group triangular partipsiPoT0.5
Mediodorsal thalamic nucleusipsiMD1
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posteromedial thalamic nucleusipsiVPM1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleus dorsomedial partipsiLDDM1
Laterodorsal thalamic nucleus ventrolateral partipsiLDVL1
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Spinal cord layers C3ipsiSCLC30.5
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Spinal cord layers C6ipsiSCLC61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Intermediolateral cell column T9ipsiIMLT9-0.5
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Spinal cord layers T12ipsiSCLT122
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Interneuron groups of layer 9 L1ipsiiGL9L1-0.5
Motoneuron groups of layer 9 L1ipsiMGL9L1-0.5
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal cord layers L5ipsiSCLL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC0.5
Periaqueductal graycontraPAG3
Lateral periaqueductal graycontraLPAG0.5
Ventrolateral periaqueductal graycontraVLPAG0.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus dorsal partcontraLPBD-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleus dorsal partcontraMdDd2
Nucleus of the solitary tractcontraSol3
Caudal ventrolateral medullacontraCVLM3
Caudal ventrolateral medulla lateral partcontraCVLMl2
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Lateral hypothalamic areacontraLH4
Medial division of the hypothalamuscontraMdH4
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Posterior thalamic nuclear groupcontraPo-0.5
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventrobasal complexcontraVB0.5
Ventral posterolateral thalamic nucleuscontraVPL0.5
Ventral posteromedial thalamic nucleuscontraVPM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 2contraCS20
Cervical segment 3contraCS30
Spinal cord layers C3contraSCLC3-0.5
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 7contraCS70
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 5contraT50
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT101
Thoracal segment 11contraT110
Thoracal segment 12contraT120.5
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Lumbar segment 6contraL60
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Sacral segment 4contraSa40
Sciatic nerveipsisci-2
StomachipsiOrgsStomS-1
Hindpaw skinipsiOrgHPS1
Biceps femoris muscleipsiMuscBF1
External urethral sphincter muscleipsiMuscEUS-0.5
Ischiocavernosus muscleipsiMuscicav-10
CervixipsiOrgUTC1
Biceps femoris musclecontraMuscBF1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR2
Ventrolateral tegmental areaipsiVLTg1.5
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1.5
A4 noradrenaline cellsipsiA40
A5 noradrenaline cellsipsiA53
A5 noradrenaline cells caudal partipsiA5C0.5
A5 noradrenaline cells rostral partipsiA5R0.5
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Rostroventrolateral reticular nucleusipsiRVL1
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
C2 adrenaline cellsipsiC20
Nucleus of the solitary tract commissural partipsiSolC1
Raphe magnus nucleusipsiRMg2
Raphe pallidus nucleusipsiRPa3
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Somatomotoric regions layer 5ipsiSMRL51
Dorsal root ganglion L1ipsiDRGL12
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL4-0.5
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Pedunculopontine tegmental nucleuscontraPPTg3
A4 noradrenaline cellscontraA40
A5 noradrenaline cellscontraA51
A5 noradrenaline cells caudal partcontraA5C0.5
A5 noradrenaline cells rostral partcontraA5R0.5
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Rostroventrolateral reticular nucleuscontraRVL-0.5
Cuneiforme nucleuscontraCnF-2
Subcoeruleus nucleuscontraSubC1
C2 adrenaline cellscontraC20
Nucleus of the solitary tract commissural partcontraSolC-0.5
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA21
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Lateral agranular prefrontal cortexcontraAGl2
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS12
Somatomotoric regions layer 5contraSMRL51
Dorsal root ganglion L1contraDRGL10.5
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Femoral nerveipsifem1
Lateral femoral cutaneous nerveipsifemLC0
Common peronal nerveipsicperonal0
Sural nerveipsisural0
Muscle branch of femoral nerveipsifemm-0.5
Saphenous nerveipsispn0
Tibial nerveipsitibial0
Obturator nerveipsiobturat1
Lateral plantar nerveipsilpn0
Medial plantar nerveipsimpn0
Subcutaneous nipple region of the mammary gland M4ipsiOrgsMamM41
Subcutaneous nipple region of the mammary gland M5ipsiOrgsMamM53
Subcutaneous nipple region of the mammary gland M6ipsiOrgsMamM63
Subcutaneous nipple region of the mammary gland M4contraOrgsMamM4-1
Subcutaneous nipple region of the mammary gland M5contraOrgsMamM5-1
Subcutaneous nipple region of the mammary gland M6contraOrgsMamM6-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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