University of Rostock

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Rat connectome



Area X L5 left


Abbreviation
SCL10L5
Color       
Superior regionsSpinal cord layers L5

SynonymsAbbr.Language
Area X L5SCL10L5Eng
Rexed X L5SCL10L5Eng
Rexed 10 L5SCL10L5Eng
Lamina X L5SCL10L5Eng
Lamina 10 L5SCL10L5Eng
Spinal cord layer 10 L5SCL10L5Eng

SubregionsSide
Area X L5 dorsal partleft
Area X L5 ventral partleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG1
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG0.5
Prerubral fieldipsiPR-3
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Tegmental areaipsiTGA-0.5
Anterior lobeipsiAnL1
Locus coeruleusipsiLC-0.5
Reticular systemipsiRF3
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm3
Ventral part of the medial reticular formationipsiRFmV-0.5
Mesencephalic reticular formationipsiMRF1
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF-0.5
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Caudal bulbar reticular formationipsiCBRF3
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt3
Medullary reticular nucleusipsiMdD3
Subnucleus reticularis dorsalisipsiSRD1
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Parvicellular reticular nucleusipsiPCRt3
Subcoeruleus nucleusipsiSubC-0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM1
A1 noradrenergic cellsipsiA13
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu1
GracileipsiGra1
Gracile nucleus lemniscal neuronsipsiGraLem-0.5
Gracile nucleus principal partipsiGr-0.5
Inferior olive dorsal nucleusipsiIOD1
Inferior olive dorsal nucleus rostral partipsiIODR1
Paragigantocellular reticular nucleusipsiPGi3
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS-0.5
HypothalamusipsiHYPO1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH1
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT3
Anteromedial thalamic nucleusipsiAM-3
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Rhomboid thalamic nucleusipsiRh-3
Submedius thalamic nucleusipsiSub0.5
Reuniens thalamic nucleusipsiRe-3
Reuniens thalamic nucleus ventral partipsiReV-3
Ventrolateral thalamic nucleusipsiVL-3
Ventral posterior thalamic complexipsiVPT1
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Ventromedial thalamic nucleusipsiVM-3
Intralaminar nucleiipsiILN1
Lateral thalamic nuclear groupipsiLTNG1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Posterior groupipsiPTG1
Reticular thalamic nucleus lateral partipsiRtL0
Ventral medial nucleus of the thalamusipsiVMT-3
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleusipsiCe0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Ventral horn C1ipsiVHC11
Ventral horn C2ipsiVHC21
Ventral horn C3ipsiVHC31
Area X C6ipsiSCL10C6-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Area X T9ipsiSCL10T9-0.5
Lumbar segment 1ipsiL1-1
Lumbar segment 3ipsiL3-0.5
Dorsal root ganglion L3ipsiDRGL3-0.5
Spinal cord border between layer 10 and layer 7 L3ipsiSCLb10L7L3-0.5
Interneuron groups of layer 9 L3ipsiiGL9L3-0.5
Motoneuron groups of layer 9 L3ipsiMGL9L3-0.5
Dorsal root ganglion L4ipsiDRGL4-0.5
Area X L4ipsiSCL10L41
Spinal cord border between layer 10 and layer 7 L4ipsiSCLb10L7L4-0.5
Spinal cord layer 8 L4ipsiSCL8L41
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Dorsal root ganglion L5ipsiDRGL5-0.5
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Dorsal root ganglion L6ipsiDRGL6-0.5
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo13
Coccygeal segment 2ipsiCo23
MesencephaloncontraMEC3
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG3
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG0.5
Red nucleuscontraR-0.5
Inferior colliculuscontraICOL3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC3
Tegmental areacontraTGA-0.5
Edinger Westphal nucleuscontraEW-0.5
Reticular systemcontraRF3
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Ventral part of the medial reticular formationcontraRFmV-0.5
Mesencephalic reticular formationcontraMRF3
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Medullary reticular nucleuscontraMdD3
Subnucleus reticularis dorsaliscontraSRD1
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd3
Parvicellular reticular nucleuscontraPCRt3
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL1
Nucleus of the solitary tract medial partcontraSolM1
A1 noradrenergic cellscontraA13
Dorsal column nucleicontraDCN-0.5
Cuneate nucleuscontraCu3
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm3
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
HypothalamuscontraHYPO3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH2
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Posterior hypothalamic areacontraPHA1
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL3
Paracentral thalamic nucleuscontraPC1.5
Posterior thalamic nuclear groupcontraPo-0.5
Submedius thalamic nucleuscontraSub0.5
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Intralaminar nucleicontraILN1.5
Lateral thalamic nuclear groupcontraLTNG3
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Posterior groupcontraPTG3
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Amygdaloid complexcontraAC-0.5
Central amygdaloid nucleuscontraCe0.5
Globus palliduscontraGP-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc3
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Ventral horn C1contraVHC11
Ventral horn C2contraVHC21
Ventral horn C3contraVHC31
Area X C6contraSCL10C6-0.5
Area X C7contraSCL10C7-0.5
Spinal cord layer 9 C7contraSCL9C7-0.5
Area X T9contraSCL10T9-0.5
Lumbar segment 3contraL3-0.5
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Coccygeal segment 1contraCo13
Coccygeal segment 2contraCo23
StomachipsiOrgsStomS-1
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp-10
Ventral bulbospongiosus muscleipsiMuscbspV-10
Dorsal bulbospongiosus muscleipsiMuscbspD-10
Ischiocavernosus muscleipsiMuscicav-10
Femoral bone marrowipsiOrgSkFemM-0.5
ClitorisipsiOrgCLi3
PenisipsiOrgPenis2
Corpus cavernosumipsiOrgCC3
Corpus spongiosumipsiOrgSPG1
ProstateipsiOrgProst-10
Seminal vesicleipsiOrgRepSV-10
Lumbar epaxial musclescontraMuscLep3
Ventral bulbospongiosus musclecontraMuscbspV-10
Dorsal bulbospongiosus musclecontraMuscbspD-10
Ischiocavernosus musclecontraMuscicav-10
Corpus cavernosumcontraOrgCC-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C2.5
A5 noradrenaline cells rostral partipsiA5R2.5
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Parapyramidal nucleusipsiPPy-0.5
Magnocellular reticular nucleus alpha partipsiNRMCa-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleusipsiPRN1
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus ventrolateral partipsiGiVL3
Medullary reticular nucleusipsiMdD1
Subnucleus reticularis dorsalisipsiSRD1
Subcoeruleus nucleusipsiSubC3
Vestibular nucleiipsiVnc1
Dorsal motor nucleus of vagusipsi101
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb2
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medullaipsiCVLM-0.5
Paragigantocellular reticular nucleusipsiPGi-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Paragigantocellular reticular nucleus medial partipsiPGiM1
Paragigantocellular reticular nucleus rostral partipsiPGiR-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL21
Dorsal root ganglion L3ipsiDRGL30
Dorsal root ganglion L4ipsiDRGL41
Dorsal root ganglion L5ipsiDRGL52
Dorsal root ganglion L6ipsiDRGL61
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
Locus coeruleuscontraLC3
Mesencephalic reticular formationcontraMRF-0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleuscontraGi0.5
Lateral paragigantocellular nucleuscontraLPGi3
Zona incerta medial partcontraZIm-0.5
Dorsolateral funiculuscontradlft-2
Dorsal root ganglion L5contraDRGL52
Peronal nerveipsiperonal1
Hamstring nerveipsihamstri2
Sciatic nerveipsisci-0.5
Tibial nerveipsitibial1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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