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Rat connectome



Medial entorhinal cortex layer 3 right


Abbreviation
MEntLyL3
Color       
Superior regionsMedial entorhinal cortex layers

SynonymsAbbr.Language
Medial entorhinal cortex layer 3MEntLyL3 

SubregionsSide
Medial entorhinal cortex layer 3 GABAergic interneuronsright
Medial entorhinal cortex layer 3 pyramidal neuronsright
Medial sector of layer 3 of the medial entorhinal cortexright
Medial entorhinal cortex layer 3 multipolar cellsright
Medial entorhinal cortex deep layer 3right
Medial entorhinal cortex superficial layer 3right
Medial entorhinal cortex layer 3 nonspatial cellsright
Medial entorhinal cortex layer 3 nonperiodic spatial cellsright
Medial entorhinal cortex layer 3 head direction cellsright
Medial entorhinal cortex layer 3 border cellsright
Medial entorhinal cortex layer 3 grid cellsright
Medial entorhinal cortex layer 3 fast spiking cellsright

Output to

NameSideAbbr.WeightDetails
HippocampuscontraHIPP-0.5
Outer two thirds of the molecular layer of the dentate gyruscontraDGmottL0.5
Dentate gyrus infrapyramidal bladecontraDGLipy-0.5
Parasubiculum intermediate partcontraPaSim-0.5
Lateral entorhinal cortex layer 3contraLEntL3-2
Medial entorhinal cortex superficial layerscontraMEntLyS3
Lateral mammillary nucleusipsiLM2
Mammillary body caudal partipsiCMAMc2
Medial mammillary nucleusipsiMMn2
Anterodorsal thalamic nucleusipsiAD1
Anteromedial thalamic nucleusipsiAM1
HippocampusipsiHIPP-0.5
Dorsal hippocampusipsiHIPPd-0.5
Dentate gyrusipsiDG3
Outer two thirds of the molecular layer of the dentate gyrusipsiDGmottL1
Dentate gyrus molecular layeripsiDGmL-0.5
Middle third of the molecular layer of the dentate gyrusipsiDGmmtL3
Polymorph layer of the dentate gyrusipsiDGpo-0.5
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus layer stratum lacunosum moleculare radiatumipsiCA1lm-0.5
Field CA1 of hippocampus stratum lacunosum-moleculareipsiCA1LM3
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad-0.5
Proximal field CA1 of hippocampusipsiPCA1-0.5
Field CA3 of hippocampusipsiCA33
Field CA3 of hippocampus stratum lacunosum-moleculareipsiCA3lm3
Inner half of the stratum lacunosum-moleculare of CA3ipsiCA3LMih-0.5
SubiculumipsiS3
Molecular layer of the subiculumipsiSumo3
Alveus of the hippocampusipsialv-0.5
Presubiculum layer 2ipsiPrSL2-0.5
Presubiculum layer 1ipsiPrSL1-0.5
Presubiculum layer 3ipsiPrSL3-0.5
ParasubiculumipsiPaS0.5
Parasubiculum layer 1ipsiPaSL1-0.5
Parasubiculum layer 2ipsiPaSL2-0.5
Parasubiculum layer 3ipsiPaSL3-0.5
Parasubiculum intermediate partipsiPaSim3
Dorsolateral entorhinal cortex layer 2ipsiDLEntL2-0.5
Lateral entorhinal cortex layer 1ipsiLEntL1-0.5
Lateral entorhinal cortex layer 2ipsiLEntL2-0.5
Lateral entorhinal cortex layer 3ipsiLEntL3-0.5
Lateral entorhinal cortex layer 5ipsiLEntL5-0.5
Medial entorhinal cortex layer 1ipsiMEntLyL1-0.5
Medial entorhinal cortex layer 2ipsiMEntLyL2-0.5
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Medial entorhinal cortex layer 5ipsiMEntLyL5-0.5
Medial entorhinal cortex layer 6ipsiMEntLyL6-0.5
Entorhinal cortex layer 3ipsiEntL3-0.5
Entorhinal cortex layer 1ipsiEntL1-0.5
Retrosplenial regionsipsiRS0.5
Postrhinal cortexipsiPOR3
Lateral septal nucleus intermediate partipsiLSI-0.5

Input from

NameSideAbbr.WeightDetails
PresubiculumcontraPrS3
Presubiculum dorsal part layer 3contraPrDL3-0.5
Presubiculum dorsal part layer 2contraPrDL2-0.5
Presubiculum layer 2contraPrSL21.5
Presubiculum layer 3contraPrSL33
Presubiculum layer 5contraPrSL51.5
Presubiculum layer 6contraPrSL61.5
Presubiculum middle levels layer 2contraPrSmiL2-0.5
Presubiculum middle levels layer 3contraPrSmiL3-0.5
Infralimbic cortexcontraIL1
Infralimbic cortex layer 2contraILL21
Infralimbic cortex layer 3contraILL31
Infralimbic cortex layer 4contraILL41
Locus coeruleusipsiLC1
Dorsal raphe nucleusipsiDR1
Magnocellular basal forebrain neuronal complexipsiMBFNC1
Nucleus of the vertical limb of the diagonal bandipsiVDB1.5
Medial septal nucleusipsiMS1
Anterodorsal thalamic nucleusipsiAD1
Anteromedial thalamic nucleusipsiAM1.5
Paraventricular thalamic nucleus caudal partipsiPVca2
Paraventricular thalamic nucleus dorsal partipsiPVdo2
Paraventricular thalamic nucleus rostral partipsiPVr2
Paraventricular thalamic nucleus ventral partipsiPVV2
Reuniens thalamic nucleusipsiRe3
Posterior amygdaloid nucleusipsiCOAp1
Amygdalohippocampal area lateral partipsiAHilp1
Ventral part of claustrumipsiVCl1
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Subiculum dorsal part rostrocaudal extentipsiSdrc2
Molecular layer of the subiculumipsiSumo-0.5
Subiculum stratum pyramidaleipsiSupyr-0.5
PresubiculumipsiPrS3
Distal protion of the presubiculumipsiPrSd3
Presubiculum dorsal part layer 3ipsiPrDL3-0.5
Presubiculum dorsal part layer 2ipsiPrDL2-0.5
Presubiculum layer 2ipsiPrSL23
Presubiculum layer 1ipsiPrSL1-0.5
Presubiculum layer 3ipsiPrSL33
Presubiculum layer 4ipsiPrSL43
Presubiculum deep layersipsiPrSDL3
Presubiculum layer 5ipsiPrSL53
Presubiculum layer 6ipsiPrSL61.5
Presubiculum temporal part layer 2ipsiPrSTL21
Presubiculum temporal part layer 3ipsiPrSTL31
Proximal portion of the presubiculumipsiPrSp0
Presubiculum midtemporal level layer 3ipsiPrSmtL33
Presubiculum middle levels layer 2ipsiPrSmiL2-0.5
Presubiculum middle levels layer 3ipsiPrSmiL3-0.5
ParasubiculumipsiPaS1
Intermediate entorhinal cortex layer 2 spiny stellate neuronsipsiIEntL2ss-0.5
Lateral entorhinal cortexipsiLEnt-0.5
Lateral entorhinal cortex layer 1ipsiLEntL1-0.5
Lateral entorhinal cortex layer 2ipsiLEntL2-0.5
Lateral entorhinal cortex layer 3ipsiLEntL3-0.5
Lateral entorhinal cortex layer 4ipsiLEntL4-0.5
Lateral entorhinal cortex layer 5ipsiLEntL5-0.5
Lateral entorhinal cortex deep layer 5ipsiLEntL5b-0.5
Lateral entorhinal cortex layer 6ipsiLEntL6-0.5
Medial entorhinal cortex layer 1ipsiMEntLyL1-0.5
Medial entorhinal cortex layer 2ipsiMEntLyL2-0.5
Medial entorhinal cortex layer 2 stellate neuronsipsiMEntLyL2st3
Medial entorhinal cortex layer 4ipsiMEntLyL4-0.5
Medial entorhinal cortex layer 5ipsiMEntLyL5-0.5
Medial entorhinal cortex layer 5 pyramidal neuronsipsiMEntLyL5py-0.5
Medial entorhinal cortex deep layer 5ipsiMEntLyL5b-0.5
Medial entorhinal cortex layer 6ipsiMEntLyL63
Medial entorhinal cortex midtemporal level layer 4ipsiMEntmiL43
Lateral entorhinal cortex piriform cortex transition zoneipsiLEntPiTZ-0.5
Retrosplenial cortexipsiRSCx-0.5
Retrosplenial agranular cortexipsiRSA0.5
Area 29 caudal partipsiA29ca1
Rostral half of area 30ipsiA30rh-0.5
Dorsal anterior cingulate cortex deep layersipsiDACCdL-0.5
Infralimbic cortexipsiIL1
Infralimbic cortex layer 2ipsiILL21
Infralimbic cortex layer 3ipsiILL31
Infralimbic cortex layer 4ipsiILL41
Parietal cortex posterior area caudal partipsiParPC-0.5
Perirhinal cortex layer 2ipsiA35L2-0.5
Perirhinal cortex layer 3ipsiA35L3-0.5
Perirhinal cortex layer 5ipsiA35L5-0.5
Perirhinal cortex layer 6ipsiA35L6-0.5
Ectorhinal cortex layer 2ipsiA36L2-0.5
Ectorhinal cortex layer 5ipsiA36L5-0.5
Ectorhinal cortex layer 6ipsiA36L6-0.5
Postrhinal cortexipsiPOR3
Primary somatosensory cortexipsiS1-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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