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Rat connectome



Spinal cord layer 2 T11 left


Abbreviation
SCL2T11
Color       
Superior regionsSuperficial dorsal horn T11

SynonymsAbbr.Language
Spinal cord layer 2 T11SCL2T11Eng

SubregionsSide
Spinal cord layer 2 inner part T11left
Spinal cord layer 2 outer part T11left

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0.5
Lateral periaqueductal grayipsiLPAG1.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Superior colliculus deep layersipsiSCd1.5
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF0.5
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus superior lateralipsiPBSL1
Lateral reticular nucleusipsiLRt3
Lateral reticular nucleus lateral partipsiLRtL1
Subnucleus reticularis dorsalisipsiSRD1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca1
Ventral lateral medulla oblongataipsiMVL1
Caudal ventrolateral medullaipsiCVLM0.5
A1 noradrenergic cellsipsiA13
Lateral hypothalamic areaipsiLH3
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
ThalamusipsiT0.5
Posterior thalamic nuclear groupipsiPo-0.5
Posterior thalamic nuclear group triangular partipsiPoT0.5
Ventrobasal complexipsiVB0.5
Ventral posterolateral thalamic nucleusipsiVPL0.5
Ventral posteromedial thalamic nucleusipsiVPM0.5
Cervical segment 1ipsiCS11
Cervical segment 2ipsiCS21
Cervical segment 3ipsiCS31
Cervical segment 4ipsiCS41
Cervical segment 5ipsiCS51
Cervical segment 6ipsiCS61
Cervical segment 7ipsiCS71
Cervical segment 8ipsiCS81
Thoracal segment 1ipsiT11
Thoracal segment 2ipsiT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Area X T6ipsiSCL10T6-0.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 6 T6ipsiSCL6T6-0.5
Spinal cord layer 3 T6ipsiSCL3T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 7 T6ipsiSCL7T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Spinal cord layer 9 T6ipsiSCL9T6-0.5
Thoracal segment 7ipsiT71
Area X T7ipsiSCL10T7-0.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 6 T7ipsiSCL6T7-0.5
Spinal cord layer 3 T7ipsiSCL3T7-0.5
Spinal cord layer 4 T7ipsiSCL4T7-0.5
Spinal cord layer 7 T7ipsiSCL7T7-0.5
Spinal cord layer 8 T7ipsiSCL8T7-0.5
Spinal cord layer 9 T7ipsiSCL9T7-0.5
Thoracal segment 8ipsiT81
Area X T8ipsiSCL10T8-0.5
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 6 T8ipsiSCL6T8-0.5
Spinal cord layer 3 T8ipsiSCL3T8-0.5
Spinal cord layer 4 T8ipsiSCL4T8-0.5
Spinal cord layer 7 T8ipsiSCL7T8-0.5
Spinal cord layer 8 T8ipsiSCL8T8-0.5
Spinal cord layer 9 T8ipsiSCL9T8-0.5
Thoracal segment 9ipsiT91
Intermediolateral cell column T9ipsiIMLT9-0.5
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 6 T9ipsiSCL6T9-0.5
Spinal cord layer 3 T9ipsiSCL3T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Spinal cord layer 8 T9ipsiSCL8T9-0.5
Spinal cord layer 9 T9ipsiSCL9T9-0.5
Thoracal segment 10ipsiT101
Area X T10ipsiSCL10T10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 6 T10ipsiSCL6T10-0.5
Spinal cord layer 3 T10ipsiSCL3T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Spinal cord layer 7 T10ipsiSCL7T10-0.5
Spinal cord layer 8 T10ipsiSCL8T10-0.5
Spinal cord layer 9 T10ipsiSCL9T10-0.5
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Spinal cord layer 9 T12ipsiSCL9T12-0.5
Thoracal segment 13ipsiT131
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Spinal cord layer 9 T13ipsiSCL9T13-0.5
Lumbar segment 1ipsiL11
Area X L1ipsiSCL10L1-0.5
Spinal cord layer 5 L1ipsiSCL5L1-0.5
Spinal cord layer 6 L1ipsiSCL6L1-0.5
Spinal cord layer 3 L1ipsiSCL3L1-0.5
Spinal cord layer 4 L1ipsiSCL4L1-0.5
Spinal cord layer 7 L1ipsiSCL7L1-0.5
Spinal cord layer 8 L1ipsiSCL8L1-0.5
Spinal cord layer 9 L1ipsiSCL9L1-0.5
Lumbar segment 2ipsiL21
Area X L2ipsiSCL10L2-0.5
Spinal cord layer 5 L2ipsiSCL5L2-0.5
Spinal cord layer 6 L2ipsiSCL6L2-0.5
Spinal cord layer 3 L2ipsiSCL3L2-0.5
Spinal cord layer 4 L2ipsiSCL4L2-0.5
Spinal cord layer 7 L2ipsiSCL7L2-0.5
Spinal cord layer 8 L2ipsiSCL8L2-0.5
Spinal cord layer 9 L2ipsiSCL9L2-0.5
Lumbar segment 3ipsiL31
Area X L3ipsiSCL10L3-0.5
Spinal cord layer 5 L3ipsiSCL5L3-0.5
Spinal cord layer 6 L3ipsiSCL6L3-0.5
Spinal cord layer 3 L3ipsiSCL3L3-0.5
Spinal cord layer 4 L3ipsiSCL4L3-0.5
Spinal cord layer 7 L3ipsiSCL7L3-0.5
Spinal cord layer 8 L3ipsiSCL8L3-0.5
Spinal cord layer 9 L3ipsiSCL9L3-0.5
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC0.5
Periaqueductal graycontraPAG3
Dorsolateral periaqueductal graycontraDLPAG0.5
Dorsomedial periaqueductal graycontraDMPAG0.5
Lateral periaqueductal graycontraLPAG2
Ventrolateral periaqueductal graycontraVLPAG3
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF3
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus dorsal partcontraLPBD-0.5
Lateral parabrachial nucleus lateral partcontraLPBL0
Parabrachial nucleus central lateral partcontraPBCeL-0.5
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL1
Nucleus of the solitary tractcontraSol1
Caudal ventrolateral medullacontraCVLM3
A1 noradrenergic cellscontraA13
Lateral hypothalamic areacontraLH4
Medial division of the hypothalamuscontraMdH4
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Ventrobasal complexcontraVB0.5
Ventral posterolateral thalamic nucleuscontraVPL0.5
Ventral posteromedial thalamic nucleuscontraVPM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Cervical segment 1contraCS10
Cervical segment 3contraCS30
Cervical segment 4contraCS40
Cervical segment 5contraCS50
Cervical segment 6contraCS60
Cervical segment 7contraCS70
Thoracal segment 1contraT10
Thoracal segment 2contraT20
Thoracal segment 3contraT30
Thoracal segment 4contraT40
Thoracal segment 5contraT50
Thoracal segment 7contraT70
Thoracal segment 8contraT80
Thoracal segment 9contraT90
Thoracal segment 10contraT100
Thoracal segment 11contraT110
Thoracal segment 13contraT130
Lumbar segment 1contraL10
Lumbar segment 2contraL20
Lumbar segment 3contraL30
Lumbar segment 4contraL40
Lumbar segment 5contraL50
Sacral segment 1contraSa10
Sacral segment 2contraSa20
Sacral segment 3contraSa30
Sacral segment 4contraSa40
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Biceps femoris muscleipsiMuscBF1
Femoral bone marrowipsiOrgSkFemM-0.5
Biceps femoris musclecontraMuscBF1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Paraventricular hypothalamic nucleusipsiPa1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion T11ipsiDRGT113
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL4-0.5
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Pedunculopontine tegmental nucleuscontraPPTg3
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC1
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Greater splanchnic nerveipsiAutoNGS3
Intercostal nerve 11ipsiiCOSTn11-0.5
Subcutaneous nipple region of the mammary gland M4ipsiOrgsMamM43
Subcutaneous nipple region of the mammary gland M5ipsiOrgsMamM51
Subcutaneous nipple region of the mammary gland M4contraOrgsMamM4-1
Subcutaneous nipple region of the mammary gland M5contraOrgsMamM5-1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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