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Rat connectome

Femoral bone marrow left

Abbreviation	OrgSkFemM
Color
Superior regions	Femoral bone

Synonyms	Abbr.	Language
Femoral bone marrow	OrgSkFemM	Eng

Input from

Name	Side	Abbr.	Weight
Nucleus of Darkschewitsch	ipsi	Dk	1
Periaqueductal gray	ipsi	PAG	3
Red nucleus	ipsi	R	1
Substantia nigra A9	ipsi	SN	1
Laterodorsal tegmental nucleus	ipsi	LDTg	1
Ventral tegmental nucleus	ipsi	VTg	1
Pedunculopontine tegmental nucleus	ipsi	PPTg	1
A5 noradrenaline cells	ipsi	A5	2
A7 noradrenaline cells	ipsi	A7	2
Locus coeruleus	ipsi	LC	3
Parapyramidal nucleus	ipsi	PPy	1
Deep mesencephalic nucleus	ipsi	DpMe	1
Pontine reticular nucleus	ipsi	PRN	1
Parabrachial nucleus	ipsi	PB	1
Gigantocellular reticular nucleus	ipsi	Gi	2
Subcoeruleus nucleus	ipsi	SubC	2
C3 adrenaline cells	ipsi	C3	1
Ambiguus nucleus	ipsi	Amb	1
Area postrema	ipsi	AP	1
Nucleus of the solitary tract	ipsi	Sol	1
Raphe nuclei	ipsi	RAN	2
Ventral lateral medulla oblongata	ipsi	MVL	2
Dorsal paragigantocellular nucleus	ipsi	DPGi	2
Lateral paragigantocellular nucleus	ipsi	LPGi	2
Diagonal band of Broca	ipsi	DBB	2
Substantia innominata	ipsi	SI	1
Lateral preoptic area	ipsi	LPO	2
Medial preoptic area	ipsi	MPA	2
Medial preoptic nucleus	ipsi	MPO	2
Median preoptic nucleus	ipsi	MnPO	1
Dorsal tuberomammillary nucleus	ipsi	DTM	1
Vascular organ of the lamina terminalis	ipsi	VOLT	2
Lateral hypothalamic area	ipsi	LH	1
Lateral hypothalamic area perifornical part	ipsi	PFx	2
Dorsal hypothalamic area	ipsi	DA	1
Dorsomedial hypothalamic nucleus [Medial zone]	ipsi	DM	1
Posterior hypothalamic area	ipsi	PHA	2
Ventromedial hypothalamic nucleus	ipsi	VMH	1
Arcuate nucleus	ipsi	Arc	1
Paraventricular hypothalamic nucleus parvicellular division dorsal part	ipsi	PaPcD	3
Paraventricular hypothalamic nucleus magnocellular division	ipsi	PaMag	2
Paraventricular hypothalamic nucleus parvocellular division dorsomedial capsular part	ipsi	PavPodmc	2
Paraventricular hypothalamic nucleus parvocellular division ventral part	ipsi	PavPoV	3
Suprachiasmatic nucleus	ipsi	SCh	1
Supraoptic nucleus [Supraoptic region]	ipsi	SO	2
Lateral mammillary nucleus	ipsi	LM	1
Premammillary nucleus	ipsi	PMAN	1
Retrochiasmatic area	ipsi	RCh	1
Paraventricular thalamic nucleus anterior part	ipsi	PVA	2
Paraventricular thalamic nucleus posterior part	ipsi	PVP	1
Subfornical organ	ipsi	SFO	1
Zona incerta	ipsi	ZI	1
Habenula	ipsi	HAB	1
Lateral funiculus	ipsi	lf	-0.5
Amygdaloid complex	ipsi	AC	1
Bed nucleus of the stria terminalis	ipsi	BST	3
Hippocampus	ipsi	HIPP	2
Entorhinal cortex	ipsi	Ent	1
Piriform cortex	ipsi	Pir	4
Cingulate cortex	ipsi	Cg	1
Prelimbic cortex	ipsi	PrL	1
Infralimbic cortex	ipsi	IL	1
Insular cortex	ipsi	ICX	4
Motoric regions	ipsi	M	1
Sensory regions	ipsi	SR	1
Septal region	ipsi	SER	2
Cervical segments	ipsi	CSeg	1
Thoracal segments	ipsi	TSeg	3
Spinal cord layer 5 T1	ipsi	SCL5T1	-0.5
Spinal cord layer 4 T1	ipsi	SCL4T1	-0.5
Spinal cord layer 1 T1	ipsi	SCL1T1	-0.5
Spinal cord layer 2 T1	ipsi	SCL2T1	-0.5
Spinal cord layer 8 T1	ipsi	SCL8T1	-0.5
Spinal cord layer 9 T1	ipsi	SCL9T1	-0.5
Spinal cord layer 5 T2	ipsi	SCL5T2	-0.5
Spinal cord layer 4 T2	ipsi	SCL4T2	-0.5
Spinal cord layer 1 T2	ipsi	SCL1T2	-0.5
Spinal cord layer 2 T2	ipsi	SCL2T2	-0.5
Spinal cord layer 8 T2	ipsi	SCL8T2	-0.5
Spinal cord layer 9 T2	ipsi	SCL9T2	-0.5
Spinal cord layer 5 T3	ipsi	SCL5T3	-0.5
Spinal cord layer 4 T3	ipsi	SCL4T3	-0.5
Spinal cord layer 1 T3	ipsi	SCL1T3	-0.5
Spinal cord layer 2 T3	ipsi	SCL2T3	-0.5
Spinal cord layer 8 T3	ipsi	SCL8T3	-0.5
Spinal cord layer 9 T3	ipsi	SCL9T3	-0.5
Intermediolateral cell column T4	ipsi	IMLT4	-0.5
Area X T4	ipsi	SCL10T4	1
Spinal cord layer 5 T4	ipsi	SCL5T4	-0.5
Spinal cord layer 4 T4	ipsi	SCL4T4	-0.5
Spinal cord layer 1 T4	ipsi	SCL1T4	-0.5
Spinal cord layer 2 T4	ipsi	SCL2T4	-0.5
Spinal cord layer 8 T4	ipsi	SCL8T4	-0.5
Spinal cord layer 9 T4	ipsi	SCL9T4	-0.5
Intermediolateral cell column T5	ipsi	IMLT5	-0.5
Area X T5	ipsi	SCL10T5	1
Spinal cord layer 5 T5	ipsi	SCL5T5	-0.5
Spinal cord layer 4 T5	ipsi	SCL4T5	-0.5
Spinal cord layer 1 T5	ipsi	SCL1T5	-0.5
Spinal cord layer 2 T5	ipsi	SCL2T5	-0.5
Spinal cord layer 8 T5	ipsi	SCL8T5	-0.5
Spinal cord layer 9 T5	ipsi	SCL9T5	-0.5
Intermediolateral cell column T6	ipsi	IMLT6	-0.5
Area X T6	ipsi	SCL10T6	1
Spinal cord layer 5 T6	ipsi	SCL5T6	-0.5
Spinal cord layer 4 T6	ipsi	SCL4T6	-0.5
Spinal cord layer 1 T6	ipsi	SCL1T6	-0.5
Spinal cord layer 2 T6	ipsi	SCL2T6	-0.5
Spinal cord layer 8 T6	ipsi	SCL8T6	-0.5
Spinal cord layer 9 T6	ipsi	SCL9T6	-0.5
Intermediolateral cell column T7	ipsi	IMLT7	-0.5
Area X T7	ipsi	SCL10T7	1
Spinal cord layer 5 T7	ipsi	SCL5T7	-0.5
Spinal cord layer 4 T7	ipsi	SCL4T7	-0.5
Spinal cord layer 1 T7	ipsi	SCL1T7	-0.5
Spinal cord layer 2 T7	ipsi	SCL2T7	-0.5
Spinal cord layer 8 T7	ipsi	SCL8T7	-0.5
Spinal cord layer 9 T7	ipsi	SCL9T7	-0.5
Intermediolateral cell column T8	ipsi	IMLT8	0.5
Area X T8	ipsi	SCL10T8	1
Spinal cord layer 5 T8	ipsi	SCL5T8	-0.5
Spinal cord layer 4 T8	ipsi	SCL4T8	-0.5
Spinal cord layer 1 T8	ipsi	SCL1T8	-0.5
Spinal cord layer 2 T8	ipsi	SCL2T8	-0.5
Spinal cord layer 8 T8	ipsi	SCL8T8	-0.5
Spinal cord layer 9 T8	ipsi	SCL9T8	-0.5
Intermediolateral cell column T9	ipsi	IMLT9	0.5
Area X T9	ipsi	SCL10T9	1
Spinal cord layer 5 T9	ipsi	SCL5T9	-0.5
Spinal cord layer 4 T9	ipsi	SCL4T9	-0.5
Spinal cord layer 1 T9	ipsi	SCL1T9	-0.5
Spinal cord layer 2 T9	ipsi	SCL2T9	-0.5
Spinal cord layer 8 T9	ipsi	SCL8T9	-0.5
Spinal cord layer 9 T9	ipsi	SCL9T9	-0.5
Intermediolateral cell column T10	ipsi	IMLT10	3
Area X T10	ipsi	SCL10T10	1
Spinal cord layer 5 T10	ipsi	SCL5T10	-0.5
Spinal cord layer 4 T10	ipsi	SCL4T10	-0.5
Spinal cord layer 1 T10	ipsi	SCL1T10	-0.5
Spinal cord layer 2 T10	ipsi	SCL2T10	-0.5
Spinal cord layer 8 T10	ipsi	SCL8T10	-0.5
Spinal cord layer 9 T10	ipsi	SCL9T10	-0.5
Intermediolateral cell column T11	ipsi	IMLT11	3
Area X T11	ipsi	SCL10T11	1
Spinal cord layer 5 T11	ipsi	SCL5T11	-0.5
Spinal cord layer 4 T11	ipsi	SCL4T11	-0.5
Spinal cord layer 1 T11	ipsi	SCL1T11	-0.5
Spinal cord layer 2 T11	ipsi	SCL2T11	-0.5
Spinal cord layer 8 T11	ipsi	SCL8T11	-0.5
Spinal cord layer 9 T11	ipsi	SCL9T11	-0.5
Intermediolateral cell column T12	ipsi	IMLT12	3
Area X T12	ipsi	SCL10T12	1
Spinal cord layer 5 T12	ipsi	SCL5T12	-0.5
Spinal cord layer 4 T12	ipsi	SCL4T12	-0.5
Spinal cord layer 1 T12	ipsi	SCL1T12	-0.5
Spinal cord layer 2 T12	ipsi	SCL2T12	-0.5
Spinal cord layer 8 T12	ipsi	SCL8T12	-0.5
Spinal cord layer 9 T12	ipsi	SCL9T12	-0.5
Intermediolateral cell column T13	ipsi	IMLT13	3
Area X T13	ipsi	SCL10T13	1
Spinal cord layer 5 T13	ipsi	SCL5T13	-0.5
Spinal cord layer 4 T13	ipsi	SCL4T13	-0.5
Spinal cord layer 1 T13	ipsi	SCL1T13	-0.5
Spinal cord layer 2 T13	ipsi	SCL2T13	-0.5
Spinal cord layer 8 T13	ipsi	SCL8T13	-0.5
Spinal cord layer 9 T13	ipsi	SCL9T13	-0.5
Lumbar segments	ipsi	LSeg	2
Intermediolateral cell column L1	ipsi	IMLL1	3
Area X L1	ipsi	SCL10L1	1
Area X L2	ipsi	SCL10L2	-0.5
Area X L3	ipsi	SCL10L3	-0.5
Area X L4	ipsi	SCL10L4	-0.5
Area X L5	ipsi	SCL10L5	-0.5
Area X L6	ipsi	SCL10L6	-0.5
Sacral segments	ipsi	SSeg	1
Sacral parasympathetic nucleus S1	ipsi	SPSyS1	-0.5
Area X S1	ipsi	SCL10S1	-0.5
Sacral parasympathetic nucleus S2	ipsi	SPSyS2	-0.5
Area X S2	ipsi	SCL10S2	-0.5
Sacral parasympathetic nucleus S3	ipsi	SPSyS3	-0.5
Area X S3	ipsi	SCL10S3	-0.5
Sacral parasympathetic nucleus S4	ipsi	SPSyS4	-0.5
Area X S4	ipsi	SCL10S4	-0.5
Nucleus of Darkschewitsch	contra	Dk	1
Periaqueductal gray	contra	PAG	3
Red nucleus	contra	R	1
Substantia nigra A9	contra	SN	1
Laterodorsal tegmental nucleus	contra	LDTg	1
Ventral tegmental nucleus	contra	VTg	1
Pedunculopontine tegmental nucleus	contra	PPTg	1
A5 noradrenaline cells	contra	A5	2
A7 noradrenaline cells	contra	A7	2
Locus coeruleus	contra	LC	3
Parapyramidal nucleus	contra	PPy	1
Deep mesencephalic nucleus	contra	DpMe	1
Pontine reticular nucleus	contra	PRN	1
Parabrachial nucleus	contra	PB	1
Gigantocellular reticular nucleus	contra	Gi	2
Subcoeruleus nucleus	contra	SubC	2
C3 adrenaline cells	contra	C3	1
Ambiguus nucleus	contra	Amb	1
Nucleus of the solitary tract	contra	Sol	1
Raphe nuclei	contra	RAN	2
Ventral lateral medulla oblongata	contra	MVL	2
Lateral paragigantocellular nucleus	contra	LPGi	2
Paraventricular hypothalamic nucleus parvicellular division dorsal part	contra	PaPcD	-0.5
Paraventricular hypothalamic nucleus magnocellular division	contra	PaMag	-0.5
Paraventricular hypothalamic nucleus parvocellular division dorsomedial capsular part	contra	PavPodmc	-0.5
Paraventricular hypothalamic nucleus parvocellular division ventral part	contra	PavPoV	-0.5
Paraventricular thalamic nucleus anterior part	contra	PVA	-0.5
Paraventricular thalamic nucleus posterior part	contra	PVP	-0.5
Cervical segments	contra	CSeg	1
Thoracal segments	contra	TSeg	3
Intermediolateral cell column T8	contra	IMLT8	-0.5
Intermediolateral cell column T9	contra	IMLT9	-0.5
Intermediolateral cell column T10	contra	IMLT10	-0.5
Intermediolateral cell column T11	contra	IMLT11	-0.5
Intermediolateral cell column T12	contra	IMLT12	-0.5
Intermediolateral cell column T13	contra	IMLT13	-0.5
Lumbar segments	contra	LSeg	2
Intermediolateral cell column L1	contra	IMLL1	-0.5
Sacral segments	contra	SSeg	1
Lumbar sympathetic ganglia	ipsi	AutoLSG	1
Thoracic sympathetic ganglion at level T 10	ipsi	AutoTSG10	1
Thoracic sympathetic ganglion at level T 11	ipsi	AutoPaGTsym11	1
Thoracic sympathetic ganglion at level T 12	ipsi	AutoPaGTsym12	1
Thoracic sympathetic ganglion at level T 13	ipsi	AutoPaGTsym13	1

Key for weights

Value	Weight
-3	unknown
-2	fibers of passage
-1	not clear
-0.5	exists
0	not present
0.5	very light
1	light / sparse
1.5	light / moderate
2	moderate / dense
2.5	moderate / strong
3	strong
4	very strong