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Rat connectome



Simple lobule left


Abbreviation
Sim
Color       
Superior regionsCerebellar cortex

SynonymsAbbr.Language
 SIM 
Lobulus simplexLSEng
Simple lobe  
Simple lobuleSimEng
Lobus simplex Eng

SubregionsSide
Lateral portion of the simple lobuleleft
Medial portion of the simple lobuleleft
Simple lobule Aleft
Simple lobule Bleft
Simple lobule zebrin bandsleft
Simple lobule C1 zoneleft
Zone D of simple lobuleleft
Simple lobule layersleft

Output to

NameSideAbbr.WeightDetails
Medial cerebellar nucleus lateral partipsiMedL-0.5
Vestibular nucleiipsiVnc-0.5

Input from

NameSideAbbr.WeightDetails
Anterior interposed nucleus dorsomedial partipsiAINDM2
Medial cerebellar nucleus dorsolateral protuberanceipsiMedDL2
Caudal two-third of the basilar ponsipsiBaPct-0.5
Ventral peduncular zoneipsiVPeZ-0.5
Pons ventral partipsiPve-0.5
Reticulotegmental nucleusipsiRETn3
Reticulotegmental nucleus of the ponsipsiRtTg2
Central part of the reticulotegmental nucleus of the ponsipsiRtTgC-0.5
Pontine nucleiipsiPn3
Pontine nuclei rostral partipsiBPNr0.5
Ventral peduncular region of the rostral half of the basilar pontine nucleiipsiBPNrVp4
Ventral region of the rostral half of the basilar pontine nucleiipsiBPNrV4
Prepositus nucleusipsiPr0.5
Caudal subregion of prepositus nucleusipsiCPr1
Intermediate reticular nucleusipsiIRt3
Paramedian reticular nucleusipsiPMn0
Pontine reticular nucleusipsiPRN1
Lateral reticular nucleusipsiLRt1
Caudal part of the lateral reticular nucleusipsiCaLRt2
Lateral reticular nucleus magnocellular partipsiLRtMC0.5
Dorsal area Of the dorsolateral part of the lateral reticular nucleus magnocellular partipsiLRtMCDDL3
Lateral reticular nucleus dorsal magnocellular partipsiLRtMCD3
Rostral part of the magnocellular lateral reticular nucleusipsiLRtMCR2
Dorsolateral part of the caudal part of the magnocellular lateral reticular nucleusipsiLRtMCCDL-0.5
Caudolateral magnocellular lateral reticular nucleusipsiLRtMCCL2
Caudoventral magnocellular lateral reticular nucleusipsiLRtMCCV2
Lateral reticular nucleus parvicellular partipsiLRtPC0.5
Lateral reticular nucleus rostral partipsiLRtr2
Lateral reticular nucleus caudal half of the subtrigeminal partipsiLRtS5ch1
Midportion of the lateral reticular nucleusipsiMpLRt3
Lateral reticular nucleus medial partipsiLRtM3
Lateral reticular nucleus medial border of the ventromedial partipsiLRtvmb3
Parvicellular reticular nucleusipsiPCRt3
Supragenual nucleusipsiSGe0
Abducens nucleusipsi61
Facial nucleusipsi70
Hypoglossal nucleusipsi12S0
Motor trigeminal nucleusipsiMo50
Principal sensory trigeminal nucleusipsiPr51
Principal sensory trigeminal nucleus ventral partipsiPr5v1
Spinal trigeminal nucleus caudal partipsiSp5C1
Spinal trigeminal nucleus interpolar partipsiSp5I3
Spinal trigeminal nucleus oral partipsiSp5O3
Nucleus intercalatusipsiNic0
Dorsal motor nucleus of vagusipsi100
Cuneate nucleusipsiCu1
External cuneate nucleusipsiECu3
Nucleus of RolleripsiRo0
Inferior oliveipsiIO3
Inferior olive dorsal nucleusipsiIOD-0.5
Inferior olive dorsal nucleus caudal partipsiIODC-0.5
Inferior olive dorsal nucleus medial partipsiIODm3
Inferior olive dorsal nucleus ventral leafipsiIODvL-0.5
Inferior olive medial nucleus caudal partipsiIOMc-0.5
Inferior olive medial nucleus intermediate partipsiIOMim-0.5
Inferior olive medial nucleus rostral partipsiIOMr-0.5
Inferior olive medial nucleus rostralmost tipipsiIOMrmT-0.5
Dorsomedial zone of the rostral lamella of the inferior olive medial nucleusipsiIOMRDM-0.5
Inferior olive principal nucleusipsiIOPr-0.5
Inferior olive principal nucleus dorsal leafipsiIOPrdl-0.5
Inferior olive principal nucleus ventral leafipsiIOPrvl-0.5
Inferior olive dorsomedial cell columnipsiIOdmc1
Central cervical nucleus C1ipsiCeCvC11
Central cervical nucleus C2ipsiCeCvC21
Spinal cord layer 6 C2ipsiSCL6C2-0.5
Central cervical nucleus C3ipsiCeCvC31
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Central cervical nucleus C4ipsiCeCvC41
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 7 C4ipsiSCL7C43
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 7 C5ipsiSCL7C53
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 7 C6ipsiSCL7C63
Spinal cord layer 5 C7ipsiSCL5C73
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 7 C7ipsiSCL7C73
Spinal cord layer 5 C8ipsiSCL5C83
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 7 C8ipsiSCL7C83
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 4 T1ipsiSCL4T10
Spinal cord layer 7 T1ipsiSCL7T13
Spinal cord layer 8 T1ipsiSCL8T10.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 4 T2ipsiSCL4T20
Spinal cord layer 7 T2ipsiSCL7T23
Spinal cord layer 8 T2ipsiSCL8T20.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 4 T3ipsiSCL4T30
Spinal cord layer 7 T3ipsiSCL7T33
Spinal cord layer 8 T3ipsiSCL8T30.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 4 T4ipsiSCL4T40
Spinal cord layer 7 T4ipsiSCL7T43
Spinal cord layer 8 T4ipsiSCL8T40.5
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 4 T5ipsiSCL4T50
Spinal cord layer 7 T5ipsiSCL7T53
Spinal cord layer 8 T5ipsiSCL8T50.5
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 4 T6ipsiSCL4T60
Spinal cord layer 7 T6ipsiSCL7T63
Spinal cord layer 8 T6ipsiSCL8T60.5
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 4 T7ipsiSCL4T70
Spinal cord layer 7 T7ipsiSCL7T73
Spinal cord layer 8 T7ipsiSCL8T70.5
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 4 T8ipsiSCL4T80
Spinal cord layer 7 T8ipsiSCL7T83
Spinal cord layer 8 T8ipsiSCL8T80.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 4 T9ipsiSCL4T90
Spinal cord layer 7 T9ipsiSCL7T93
Spinal cord layer 8 T9ipsiSCL8T90.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 4 T10ipsiSCL4T100
Spinal cord layer 7 T10ipsiSCL7T103
Spinal cord layer 8 T10ipsiSCL8T100.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 4 T11ipsiSCL4T110
Spinal cord layer 7 T11ipsiSCL7T113
Spinal cord layer 8 T11ipsiSCL8T110.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 4 T12ipsiSCL4T120
Spinal cord layer 7 T12ipsiSCL7T123
Spinal cord layer 8 T12ipsiSCL8T120.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 4 T13ipsiSCL4T130
Spinal cord layer 7 T13ipsiSCL7T133
Spinal cord layer 8 T13ipsiSCL8T130.5
Spinal cord layer 5 L1ipsiSCL5L13
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 8 L1ipsiSCL8L11
Spinal cord layer 5 L2ipsiSCL5L23
Spinal cord layer 7 L2ipsiSCL7L23
Spinal cord layer 8 L2ipsiSCL8L21
Spinal cord layer 5 L3ipsiSCL5L33
Spinal cord layer 7 L3ipsiSCL7L33
Spinal cord layer 8 L3ipsiSCL8L31
Spinal cord layer 5 L4ipsiSCL5L40.5
Spinal cord layer 6 L4ipsiSCL6L41
Spinal cord layer 7 L4ipsiSCL7L43
Spinal cord layer 8 L4ipsiSCL8L41
Spinal cord layer 5 L5ipsiSCL5L50.5
Spinal cord layer 6 L5ipsiSCL6L51
Spinal cord layer 7 L5ipsiSCL7L53
Spinal cord layer 8 L5ipsiSCL8L51
Spinal cord layer 5 L6ipsiSCL5L61
Ventral horn L6ipsiVHL61
Spinal cord layer 7 L6ipsiSCL7L61
Sacral precerebellar nucleus S1ipsiSPrCBS11
Spinal cord layer 5 S1ipsiSCL5S11
Ventral horn S1ipsiVHSa11
Spinal cord layer 7 S1ipsiSCL7S11
Sacral precerebellar nucleus S2ipsiSPrCBS21
Spinal cord layer 5 S2ipsiSCL5S21
Ventral horn S2ipsiVHSa21
Spinal cord layer 7 S2ipsiSCL7S21
Sacral precerebellar nucleus S3ipsiSPrCBS31
Spinal cord layer 5 S3ipsiSCL5S31
Ventral horn S3ipsiVHSa31
Spinal cord layer 7 S3ipsiSCL7S31
Sacral precerebellar nucleus S4ipsiSPrCBS41
Spinal cord layer 5 S4ipsiSCL5S41
Ventral horn S4ipsiVHSa41
Spinal cord layer 7 S4ipsiSCL7S41
Spinal cord layer 5 Co1ipsiSCL5Co11
Ventral horn Co1ipsiVHCo11
Spinal cord layer 7 Co1ipsiSCL7Co11
Spinal cord layer 5 Co2ipsiSCL5Co21
Ventral horn Co2ipsiVHCo21
Spinal cord layer 7 Co2ipsiSCL7Co21
Spinal cord layer 5 Co3ipsiSCL5Co31
Ventral horn Co3ipsiVHCo31
Spinal cord layer 7 Co3ipsiSCL7Co31
Ventral surface of basilar ponscontraVBaP-0.5
Ventral peduncular zonecontraVPeZ-0.5
Pons ventral partcontraPve-0.5
Reticulotegmental nucleuscontraRETn1
Reticulotegmental nucleus of the ponscontraRtTg2
Central portion of the ventral pontine graycontraCVPG-0.5
Pontine nucleicontraPn1
Pontine nuclei rostral partcontraBPNr0.5
Ventral peduncular region of the rostral half of the basilar pontine nucleicontraBPNrVp4
Ventral region of the rostral half of the basilar pontine nucleicontraBPNrV4
Prepositus nucleuscontraPr0.5
Caudal subregion of prepositus nucleuscontraCPr1
Intermediate reticular nucleuscontraIRt1
Paramedian reticular nucleuscontraPMn0
Lateral reticular nucleuscontraLRt1
Caudal part of the lateral reticular nucleuscontraCaLRt1
Lateral reticular nucleus magnocellular partcontraLRtMC0.5
Rostral part of the magnocellular lateral reticular nucleuscontraLRtMCR2
Caudolateral magnocellular lateral reticular nucleuscontraLRtMCCL2
Caudoventral magnocellular lateral reticular nucleuscontraLRtMCCV2
Lateral reticular nucleus parvicellular partcontraLRtPC0.5
Lateral reticular nucleus rostral partcontraLRtr1
Lateral reticular nucleus caudal half of the subtrigeminal partcontraLRtS5ch1
Midportion of the lateral reticular nucleuscontraMpLRt1
Lateral reticular nucleus medial partcontraLRtM3
Parvicellular reticular nucleuscontraPCRt1
Supragenual nucleuscontraSGe0
Abducens nucleuscontra61
Facial nucleuscontra70
Hypoglossal nucleuscontra12S0
Motor trigeminal nucleuscontraMo50
Spinal trigeminal nucleuscontraSp5nc1
Spinal trigeminal nucleus interpolar partcontraSp5I1
Spinal trigeminal nucleus oral partcontraSp5O1
Nucleus intercalatuscontraNic0
Dorsal motor nucleus of vaguscontra100
Cuneate nucleuscontraCu2
External cuneate nucleuscontraECu1
Nucleus of RollercontraRo0
Olivary nucleuscontraON3
Inferior olivecontraIO3
Inferior olive cap of Kooy of the medial nucleuscontraIOK3
Inferior olive dorsal nucleuscontraIOD3
Inferior olive dorsal nucleus rostral partcontraIODR3
Inferior olive dorsal nucleus rostromedial partcontraIODrm-0.5
Inferior olive medial nucleuscontraIOM3
Inferior olive medial nucleus caudal partcontraIOMc-0.5
Inferior olive medial nucleus rostral partcontraIOMr-0.5
Inferior olive beta subnucleuscontraIOBe3
Inferior olive principal nucleuscontraIOPr3
Inferior olive principal nucleus rostral partcontraIOPrR-0.5
Medial part of the subnucleus of the inferior olivecontraIOPrM-0.5
Inferior olive dorsomedial cell columncontraIOdmc3
Inferior olive dorsomedial cell groupcontraIODM-0.5
Rostral half inferior olivecontraIORh3
Forelimb motor cortexcontraFMCx-1
Central cervical nucleus C1contraCeCvC13
Dorsal horn C1contraDHC11
Central cervical nucleus C2contraCeCvC23
Spinal cord layer 7 C2contraSCL7C21
Spinal cord layer 8 C2contraSCL8C21
Central cervical nucleus C3contraCeCvC33
Spinal cord layer 7 C3contraSCL7C31
Spinal cord layer 8 C3contraSCL8C31
Central cervical nucleus C4contraCeCvC41
Spinal cord layer 7 C4contraSCL7C43
Spinal cord layer 8 C4contraSCL8C41
Spinal cord layer 7 C5contraSCL7C53
Spinal cord layer 7 C6contraSCL7C63
Spinal cord layer 5 C7contraSCL5C73
Spinal cord layer 7 C7contraSCL7C73
Spinal cord layer 5 C8contraSCL5C83
Spinal cord layer 7 C8contraSCL7C83
Spinal cord layer 4 T1contraSCL4T10
Spinal cord layer 7 T1contraSCL7T11
Spinal cord layer 8 T1contraSCL8T10.5
Spinal cord layer 4 T2contraSCL4T20
Spinal cord layer 7 T2contraSCL7T21
Spinal cord layer 8 T2contraSCL8T20.5
Spinal cord layer 4 T3contraSCL4T30
Spinal cord layer 7 T3contraSCL7T31
Spinal cord layer 8 T3contraSCL8T30.5
Spinal cord layer 4 T4contraSCL4T40
Spinal cord layer 7 T4contraSCL7T41
Spinal cord layer 8 T4contraSCL8T40.5
Spinal cord layer 4 T5contraSCL4T50
Spinal cord layer 7 T5contraSCL7T51
Spinal cord layer 8 T5contraSCL8T50.5
Spinal cord layer 4 T6contraSCL4T60
Spinal cord layer 7 T6contraSCL7T61
Spinal cord layer 8 T6contraSCL8T60.5
Spinal cord layer 4 T7contraSCL4T70
Spinal cord layer 7 T7contraSCL7T71
Spinal cord layer 8 T7contraSCL8T70.5
Spinal cord layer 4 T8contraSCL4T80
Spinal cord layer 7 T8contraSCL7T81
Spinal cord layer 8 T8contraSCL8T80.5
Spinal cord layer 4 T9contraSCL4T90
Spinal cord layer 7 T9contraSCL7T91
Spinal cord layer 8 T9contraSCL8T90.5
Spinal cord layer 4 T10contraSCL4T100
Spinal cord layer 7 T10contraSCL7T101
Spinal cord layer 8 T10contraSCL8T100.5
Spinal cord layer 4 T11contraSCL4T110
Ventral horn T11contraVHT11-0.5
Intermediate zone T11contraizVHT11-0.5
Spinal cord layer 7 T11contraSCL7T111
Spinal cord layer 8 T11contraSCL8T110.5
Spinal cord layer 4 T12contraSCL4T120
Ventral horn T12contraVHT12-0.5
Intermediate zone T12contraizVHT12-0.5
Spinal cord layer 7 T12contraSCL7T121
Spinal cord layer 8 T12contraSCL8T120.5
Spinal cord layer 4 T13contraSCL4T130
Ventral horn T13contraVHT13-0.5
Intermediate zone T13contraizVHT13-0.5
Spinal cord layer 7 T13contraSCL7T131
Spinal cord layer 8 T13contraSCL8T130.5
Spinal cord layer 5 L1contraSCL5L11
Ventral horn L1contraVHL1-0.5
Intermediate zone L1contraizVHL1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L11
Spinal cord layer 5 L2contraSCL5L21
Ventral horn L2contraVHL2-0.5
Intermediate zone L2contraizVHL2-0.5
Spinal cord layer 7 L2contraSCL7L2-0.5
Spinal cord layer 8 L2contraSCL8L21
Spinal cord layer 5 L3contraSCL5L31
Ventral horn L3contraVHL3-0.5
Intermediate zone L3contraizVHL3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 8 L3contraSCL8L31
Spinal cord layer 5 L4contraSCL5L40.5
Spinal cord layer 6 L4contraSCL6L41
Spinal cord layer 7 L4contraSCL7L4-0.5
Spinal cord layer 8 L4contraSCL8L41
Spinal cord layer 5 L5contraSCL5L50.5
Spinal cord layer 6 L5contraSCL6L51
Spinal cord layer 7 L5contraSCL7L5-0.5
Spinal cord layer 8 L5contraSCL8L51
Spinal cord layer 5 L6contraSCL5L61
Ventral horn L6contraVHL61
Spinal cord layer 7 L6contraSCL7L61
Sacral precerebellar nucleus S1contraSPrCBS11
Dorsal horn S1contraDHS1-0.5
Spinal cord layer 5 S1contraSCL5S11
Ventral horn S1contraVHSa11
Spinal cord layer 7 S1contraSCL7S11
Sacral precerebellar nucleus S2contraSPrCBS21
Dorsal horn S2contraDHS2-0.5
Spinal cord layer 5 S2contraSCL5S21
Ventral horn S2contraVHSa21
Spinal cord layer 7 S2contraSCL7S21
Sacral precerebellar nucleus S3contraSPrCBS31
Dorsal horn S3contraDHS3-0.5
Spinal cord layer 5 S3contraSCL5S31
Ventral horn S3contraVHSa31
Spinal cord layer 7 S3contraSCL7S31
Sacral precerebellar nucleus S4contraSPrCBS41
Dorsal horn S4contraDHS4-0.5
Spinal cord layer 5 S4contraSCL5S41
Ventral horn S4contraVHSa41
Spinal cord layer 7 S4contraSCL7S41
Dorsal horn Co1contraDHCo1-0.5
Spinal cord layer 5 Co1contraSCL5Co11
Ventral horn Co1contraVHCo11
Spinal cord layer 7 Co1contraSCL7Co11
Dorsal horn Co2contraDHCo2-0.5
Spinal cord layer 5 Co2contraSCL5Co21
Ventral horn Co2contraVHCo21
Spinal cord layer 7 Co2contraSCL7Co21
Dorsal horn Co3contraDHCo3-0.5
Spinal cord layer 5 Co3contraSCL5Co31
Ventral horn Co3contraVHCo31
Spinal cord layer 7 Co3contraSCL7Co31
Hypoglossal nerveipsi12P1
Hypoglossal nervecontra12P1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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