University of Rostock

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Rat connectome



Optic nerve layer of the superior colliculus right


Abbreviation
Op
Color       
Superior regionsSuperior colliculus superficial layers

SynonymsAbbr.Language
 SCs 
 SCop 
Superior colliculus optic layer  
Lamina III of the superior colliculus  
Lamina 3 of the superior colliculus  
Layer 3 of the superior colliculus  
Stratum opticumSOEng
Stratum opticum of the superior colliculus Eng
Optic nerve layer of the superior colliculusOpEng
Optic layer  

SubregionsSide
Optic nerve layer of the superior colliculus deep partsright
Optic nerve layer of the superior colliculus medial partright
Mediolateral extent of the optic gray layer of the superior colliculusright
Rostrocaudal extent of the optic gray layer of the superior colliculusright
Optic nerve layer of the superior colliculus rostral partright
Optic nerve layer of the superior colliculus lateral partright
Optic nerve layer of the superior colliculus central partright
Lateral one-third of the stratum opticum of the superior colliculusright
Optic nerve layer of the superior colliculus ventromedial partright

Output to

NameSideAbbr.WeightDetails
Interstitial nucleus of CajalcontraInC0.5
Facial nucleus intermediate partcontra7i2
Facial nucleus dorsal intermediate subnucleuscontra7DI2
Principal sensory trigeminal nucleus ventral partcontraPr5v1
Paragigantocellular reticular nucleuscontraPGi-0.5
Dorsal part of the lateral geniculate complexcontraLGd-0.5
Suprageniculate thalamic nucleuscontraSG1.5
Posterior intralaminar thalamic nucleuscontraPIL1.5
Lateral posterior thalamic nucleuscontraLP1
Lateral posterior thalamic nucleus dorsomedial sectorcontraLPdm-0.5
Ventral lateral geniculate nucleuscontraVLG1
Medial geniculate nucleuscontraMG1.5
Medial geniculate nucleus medial partcontraMGM1.5
Lateral paralemniscal nucleusipsiLPL2
Periaqueductal gray rostral partipsiPAGR3
Inferior colliculusipsiICOL0
Superior colliculus superficial layersipsiSCs-0.5
Optic nerve layer of the superior colliculusipsiOp-0.5
Superior colliculus superficial layers commissural neuronsipsiSCscn1.5
Substantia nigra compact partipsiSNC1
Peripeduncular nucleusipsiPP1
Interstitial nucleus of CajalipsiInC1
Facial nucleus intermediate partipsi7i1
Facial nucleus dorsal intermediate subnucleusipsi7DI1
Paragigantocellular reticular nucleusipsiPGi1
Suprachiasmatic nucleusipsiSCh3
Dorsal part of the lateral geniculate complexipsiLGd2
Posterior thalamic nuclear groupipsiPo-3
Suprageniculate thalamic nucleusipsiSG3
Posterior intralaminar thalamic nucleusipsiPIL3
Lateral thalamic nuclear groupipsiLTNG3
Lateral posterior thalamic nucleusipsiLP3
Lateral posterior thalamic nucleus caudal partipsiLPca2
Lateral posterior thalamic nucleus dorsomedial sectoripsiLPdm-0.5
Pretectal regionipsiPRT2
Primary visual cortexipsiV1-0.5
Dorsal geniculate nucleus lateral partipsiDLGl3
Lateral geniculate complexipsiLG1.5
Ventral lateral geniculate nucleusipsiVLG2
Dorsal portion of the lateral geniculate complexipsiLGD-0.5
Medial geniculate nucleusipsiMG3
Medial geniculate nucleus medial partipsiMGM3
EyecontraOrgEye3
Vitreous humor of eyecontraOrgVHEye3
EyeipsiOrgEye1

Input from

NameSideAbbr.WeightDetails
Sublayer b of superior colliculus intermediate layerscontraSCiB1
Posterior interposed nucleuscontraCERpin1
Spinal trigeminal nucleuscontraSp5nc3
GracilecontraGra1
Ventral two-thirds of the gracile nucleuscontraGrVtt1
RetinacontraRET3
Retrosplenial agranular cortex layer 4contraRSAL4-0.5
Retrosplenial agranular cortex layer 5contraRSAL5-0.5
Retrosplenial agranular cortex layer 6contraRSAL6-0.5
Retrosplenial agranular cortex layer 1contraRSAL1-0.5
Retrosplenial agranular cortex layer 2contraRSAL2-0.5
Retrosplenial agranular cortex layer 3contraRSAL3-0.5
Retrosplenial granular cortex layer 5contraRSGL5-0.5
Retrosplenial granular cortex layer 6contraRSGL6-0.5
Retrosplenial granular cortex layer 1contraRSGL1-0.5
Retrosplenial granular cortex layer 2contraRSGL2-0.5
Retrosplenial granular cortex layer 3contraRSGL3-0.5
Retrosplenial granular cortex layer 4contraRSGL4-0.5
White matter of the retrosplenial granular cortexcontraRSGraWM-0.5
Ventral lateral geniculate nucleuscontraVLG2
Parabigeminal nucleusipsiPBG-0.5
Periaqueductal grayipsiPAG3
Inferior colliculusipsiICOL3
Superior colliculusipsiSC3
Optic nerve layer of the superior colliculusipsiOp-0.5
Superficial gray layer of the superior colliculusipsiSuG-0.5
Superior colliculus superficial layers commissural neuronsipsiSCscn-0.5
Intermediate gray layer of the superior colliculusipsiInG-0.5
Superior colliculus deep layersipsiSCd3
Stratum album intermediale of the medial superior colliculusipsimSCLsai3
Stratum album profundum of the medial superior colliculusipsimSCLsap3
Substantia nigra A9ipsiSN1
Ventral tegmental area A10ipsiVTA1
Posterior interposed nucleusipsiCERpin0
Intertrigeminal nucleusipsiI50
Ventral part of the lateral geniculate complexipsiLGv2
Suprageniculate thalamic nucleusipsiSG-0.5
Posterior intralaminar thalamic nucleusipsiPIL-0.5
Lateral posterior thalamic nucleusipsiLP2
RetinaipsiRET3
Retinal ganglion cellsipsiRETg-0.5
Accessory optic systemipsiAOS1
Medial terminal nucleus of the accessory optic tractipsiMT1
Retrosplenial cortexipsiRSCx-0.5
Retrosplenial agranular cortex layer 4ipsiRSAL43
Retrosplenial agranular cortex layer 5ipsiRSAL53
Retrosplenial agranular cortex layer 6ipsiRSAL63
Retrosplenial agranular cortex layer 1ipsiRSAL13
Retrosplenial agranular cortex layer 2ipsiRSAL23
Retrosplenial agranular cortex layer 3ipsiRSAL33
Retrosplenial granular cortex layer 5ipsiRSGL53
Retrosplenial granular cortex layer 6ipsiRSGL63
Retrosplenial granular cortex layer 1ipsiRSGL13
Retrosplenial granular cortex layer 2ipsiRSGL23
Retrosplenial granular cortex layer 3ipsiRSGL33
Retrosplenial granular cortex layer 4ipsiRSGL43
White matter of the retrosplenial granular cortexipsiRSGraWM3
Primary somatosensory cortex face regionipsiS1FR0
Primary somatosensory cortex forelimb regionipsiS1FL0
Primary somatosensory cortex hindlimb regionipsiS1HL0
Visual regionsipsiVR3
Primary visual cortexipsiV13
Primary visual cortex layer 1ipsiV1L1-2
Primary visual cortex layer 5ipsiV1L5-0.5
Middle layer of primary visual cortexipsiV1L5m3
Primary visual cortex layer 5 aipsiV1L5a3
Primary visual cortex superficial layer 2 3ipsiV1L23s-2
Secondary visual cortex posterior part of medial area medial partipsiV2MMep-0.5
Secondary visual cortex lateral areaipsiV2L2
Lateromedial area of subdivision 18a in lateral extrastriate cortexipsiLMV2L-0.5
Primary visual cortex monocular areaipsiV1M-2
Lateral extrastriate cortexipsiVISxL1
Mediolateral cortical visual areaipsiVISlm1
Lateromedial part of the lateral extrastriate cortexipsiVISLLM3
Medial extrastriate cortexipsiVISM-0.5
Posterior part of the medial extrastriate cortexipsiVISMP3
Ventral lateral geniculate nucleusipsiVLG2
Ventral lateral geniculate nucleus ventrolateral partipsiVLGvL2
Marginal zone of the medial geniculateipsiMZMG-0.5
Medial geniculate nucleusipsiMG-0.5
Medial geniculate nucleus caudal partipsiMGc-0.5
Vitreous humor of eyecontraOrgVHEye3

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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