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Rat connectome



Periaqueductal gray rostral part right


Abbreviation
PAGR
Color       
Superior regionsPeriaqueductal gray

SynonymsAbbr.Language
Rostral part of the periaqueductal gray  
Periaqueductal gray rostral partPAGREng
Rostral level of the periaqueductal gray Eng

SubregionsSide
Periaqueductal gray rostral poleright
Periaqueductal gray rostrolateral partright
Periaqueductal gray rostromedial divisionright
Medial region of the rostral periaqueductal grayright
Rostral periaqueductal gray dorsal partright
Dorsal periaqueductal gray lateral partright
Periaqueductal gray rostral most partright

Output to

NameSideAbbr.WeightDetails
Edinger Westphal nucleuscontraEW-0.5
Pontine sublaterodorsal nucleuscontraPsLdn1
Raphe magnus nucleuscontraRMg-0.5
Raphe pallidus nucleuscontraRPa-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Amygdaloid complexcontraAC-0.5
Central amygdaloid nucleuscontraCe-0.5
Accumbens nucleuscontraAc-0.5
Ventrolateral orbital areacontraVLO-0.5
Periaqueductal grayipsiPAG-0.5
Ventral tegmental area A10ipsiVTA-0.5
Edinger Westphal nucleusipsiEW-0.5
Locus coeruleusipsiLC3
Pontine sublaterodorsal nucleusipsiPsLdn3
Gigantocellular reticular nucleus alpha partipsiGiA3
Ambiguus nucleusipsiAmb1
Raphe magnus nucleusipsiRMg-0.5
Raphe pallidus nucleusipsiRPa-0.5
Caudal ventrolateral medullaipsiCVLM1
Lateral paragigantocellular nucleus juxtafacial partipsiLPGiJ3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Pineal glandipsiPi4
Amygdaloid complexipsiAC1
Central amygdaloid nucleusipsiCe1
Accumbens nucleusipsiAc1
Ventrolateral orbital areaipsiVLO1
KidneycontraOrgsKid-0.5
SpleencontraOrgSPL-0.5
KidneyipsiOrgsKid-0.5
SpleenipsiOrgSPL1

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0.5
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray caudal partcontraPAGvlc2
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Edinger Westphal nucleuscontraEW-0.5
Dorsal raphe nucleuscontraDR-0.5
Olivary pretectal nucleuscontraOPT3
Preoptic regioncontraPREO-0.5
Lateral zonecontraLHA-0.5
Lateral hypothalamic nucleuscontraLHN-0.5
Anterior hypothalamic areacontraAHA-0.5
Anterior hypothalamic area central partcontraAHAC-0.5
Posterior hypothalamic areacontraPHA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Premammillary nucleus dorsal partcontraPMD-0.5
Zona incertacontraZI-0.5
Tuber cinereum areacontraTC-0.5
Lateral habenular nucleuscontraLHb-0.5
Parasubthalamic nucleuscontraPSTh-2
Cingulate cortexcontraCg-0.5
Insular cortexcontraICX0.5
Dorsal peduncular cortexcontraDP1.5
Precommissural nucleuscontraPrC-0.5
Lateral septal nucleus dorsal partcontraLSD-2
Lateral septal nucleus intermediate partcontraLSI-0.5
Lateral septal nucleus ventral partcontraLSV-2
Anteroposterior extension of the lateral septal nucleuscontraLSap-2
Ventroposterior extension of the lateral septal nucleuscontraLSvp-2
Spinal cord layer 1 C1contraSCL1C10.5
Spinal cord layer 1 C2contraSCL1C20.5
Spinal cord layer 1 C3contraSCL1C30.5
Spinal cord layer 1 C4contraSCL1C40.5
Spinal cord layer 1 C5contraSCL1C50.5
Spinal cord layer 1 C6contraSCL1C60.5
Spinal cord layer 1 C7contraSCL1C70.5
Spinal cord layer 1 C8contraSCL1C80.5
Spinal cord layer 1 T1contraSCL1T10.5
Spinal cord layer 1 T2contraSCL1T20.5
Spinal cord layer 1 T3contraSCL1T30.5
Spinal cord layer 1 T4contraSCL1T40.5
Spinal cord layer 1 T5contraSCL1T50.5
Spinal cord layer 1 T6contraSCL1T60.5
Spinal cord layer 1 T7contraSCL1T70.5
Spinal cord layer 1 T8contraSCL1T80.5
Spinal cord layer 1 T9contraSCL1T90.5
Spinal cord layer 1 T10contraSCL1T100.5
Spinal cord layer 1 T11contraSCL1T110.5
Spinal cord layer 1 T12contraSCL1T120.5
Spinal cord layer 1 T13contraSCL1T130.5
Spinal cord layer 1 L1contraSCL1L10.5
Spinal cord layer 1 L2contraSCL1L20.5
Spinal cord layer 1 L3contraSCL1L30.5
Spinal cord layer 1 L4contraSCL1L40.5
Spinal cord layer 1 L5contraSCL1L50.5
Spinal cord layer 1 L6contraSCL1L60.5
Periaqueductal grayipsiPAG3
Dorsal periaqueductal gray caudal partipsiDPAGC1
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Ventrolateral periaqueductal grayipsiVLPAG3
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0.5
Pararubral nucleusipsiPaR3
Intercollicular nucleusipsiInCo3
Optic nerve layer of the superior colliculusipsiOp3
Deep gray layer of the superior colliculusipsiDpG3
Deep white layer of the superior colliculusipsiDpWh3
Microcellular tegmental nucleusipsiMiTg3
Peripeduncular nucleusipsiPP3
Pedunculopontine tegmental nucleusipsiPPTg3
Edinger Westphal nucleusipsiEW-0.5
Deep mesencephalic nucleusipsiDpMe3
Mesencephalic trigeminal nucleusipsiMe53
Dorsal raphe nucleusipsiDR-0.5
Olivary pretectal nucleusipsiOPT3
Medial septal nucleusipsiMS3
Substantia innominataipsiSI2
Preoptic regionipsiPREO3
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA3
Medial preoptic area dorsolateral partipsiMPADL3
Anterodorsal preoptic nucleusipsiADP2
Medial preoptic nucleus lateral partipsiMPOL2.5
Medial preoptic nucleus medial partipsiMPOM3
Median preoptic nucleusipsiMnPO-0.5
Ventromedial preoptic nucleusipsiVMPO2
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral zoneipsiLHA3
Lateral hypothalamic nucleusipsiLHN3
Ventrolateral hypothalamic nucleusipsiVLH-0.5
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic area central partipsiAHAC3
Anterior hypothalamic area posterior partipsiAHAP3
Anteroventral preoptic nucleusipsiAnV-0.5
Area lateralis hypothalamicus posterior [Regio hypothalamus caudalis]ipsiDMrhc-0.5
Dorsal hypothalamic areaipsiDA-0.5
Posterior hypothalamic areaipsiPHA3
Ventromedial hypothalamic nucleusipsiVMH3
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR-0.5
Paraventricular hypothalamic nucleusipsiPa0
Periventricular hypothalamic nucleusipsiPe-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Premammillary nucleus dorsal partipsiPMD3
Perifornical nucleusipsiPeF-0.5
Zona incertaipsiZI3
Rostral portion of the zona incerta medial partipsiZImR-0.5
Tuber cinereum areaipsiTC3
Lateral habenular nucleusipsiLHb3
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt3
Anterior amygdaloid areaipsiAA-0.5
Medial amygdaloid nucleus rostral partipsiMeRo-0.5
HippocampusipsiHIPP0
Subiculum ventral partipsiSv1
Retrosplenial agranular cortexipsiRSA-0.5
Limbic regionsipsiLR3
Cingulate cortexipsiCg-0.5
Insular cortexipsiICX1
Agranular insular cortexipsiAI-0.5
Dysgranular insular cortexipsiDI-0.5
Granular insular cortexipsiGI-0.5
Ectorhinal cortexipsiA36-0.5
Dorsal peduncular cortexipsiDP3
Precommissural nucleusipsiPrC3
Lateral septal nucleusipsiLS3
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus intermediate partipsiLSI3
Lateral septal nucleus ventral partipsiLSV3
Anteroventral ventricular regionipsi3Vav-0.5
Spinal cord layer 1 C1ipsiSCL1C10.5
Spinal cord layer 1 C2ipsiSCL1C20.5
Spinal cord layer 1 C3ipsiSCL1C30.5
Spinal cord layer 1 C4ipsiSCL1C40.5
Spinal cord layer 1 C5ipsiSCL1C50.5
Spinal cord layer 1 C6ipsiSCL1C60.5
Spinal cord layer 1 C7ipsiSCL1C70.5
Spinal cord layer 1 C8ipsiSCL1C80.5
Spinal cord layer 1 T1ipsiSCL1T10.5
Spinal cord layer 1 T2ipsiSCL1T20.5
Spinal cord layer 1 T3ipsiSCL1T30.5
Spinal cord layer 1 T4ipsiSCL1T40.5
Spinal cord layer 1 T5ipsiSCL1T50.5
Spinal cord layer 1 T6ipsiSCL1T60.5
Spinal cord layer 1 T7ipsiSCL1T70.5
Spinal cord layer 1 T8ipsiSCL1T80.5
Spinal cord layer 1 T9ipsiSCL1T90.5
Spinal cord layer 1 T10ipsiSCL1T100.5
Spinal cord layer 1 T11ipsiSCL1T110.5
Spinal cord layer 1 T12ipsiSCL1T120.5
Spinal cord layer 1 T13ipsiSCL1T130.5
Spinal cord layer 1 L1ipsiSCL1L10.5
Spinal cord layer 1 L2ipsiSCL1L20.5
Spinal cord layer 1 L3ipsiSCL1L30.5
Spinal cord layer 1 L4ipsiSCL1L40.5
Spinal cord layer 1 L5ipsiSCL1L50.5
Spinal cord layer 1 L6ipsiSCL1L60.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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