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Rat connectome



Posterior intralaminar thalamic nucleus left


Abbreviation
PIL
Color       
Superior regionsIntralaminar nuclei

SynonymsAbbr.Language
 PI 
Posterior iIntralaminar nucleus of the thalamus  
Posterior intralaminar nucleus  
Posterior intralaminar thalamic group Eng
Posterior internuclear nucleusPINEng
Posterior intralaminar thalamic nucleusPILEng
Posterior intralaminar thalamic complex Eng

SubregionsSide
Caudalmost part of the posterior intralaminar thalamic nucleusleft
Parafascicular centre-median complexleft
Posterior intralaminar thalamic nucleus dorsal tipleft
Posterior intralaminar thalamic nucleus lateral partleft
Posterior intralaminar thalamic nucleus ventrolateral wingleft
Posterior intralaminar thalamic nucleus ventromedial wingleft
Dorsal part of the posterior intralaminar thalamic nucleusleft
Central part of the posterior intralaminar thalamic nucleusleft
Posterior intralaminar thalamic nucleus medial partleft

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG-1
Central grey periaqueductalipsiCGPAG2
Medial paralemniscal nucleusipsiMPL2
Ventrolateral periaqueductal grayipsiVLPAG3
Inferior colliculusipsiICOL2
External cortex of the inferior colliculusipsiECIC1
Dorsal cortex of the inferior colliculusipsiDCIC3
Pericentral nucleus inferior colliculusipsiICOLp2
Commissure of the superior colliculusipsicsc-2
Optic nerve layer of the superior colliculusipsiOp-0.5
Superior colliculus deep layersipsiSCd2
Deep gray layer of the superior colliculusipsiDpG3
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR2
Ventral tegmental area A10ipsiVTA2
Peripeduncular nucleusipsiPP-0.5
Middle part of the retrorubral fieldipsiRRmi1
Cuneiforme nucleusipsiCnF1
Paragigantocellular reticular nucleusipsiPGi1
ProsencephalonipsiPRC2
Basal forebrainipsiBAF-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB1
Substantia innominataipsiSI3
Preoptic regionipsiPREO2
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA2
Medial preoptic area lateral partipsiMPAL2
Medial preoptic nucleusipsiMPO-0.5
HypothalamusipsiHYPO3
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH1
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic nucleus rostral zoneipsiAHnR2
Dorsal hypothalamic areaipsiDA3
Dorsomedial hypothalamic areaipsiDMHyA3
Ventromedial hypothalamic nucleus ventral partipsiVMHV3
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP0.5
Arcuate nucleusipsiArc-0.5
Nucleus paraventricularis magnocellular partipsiPaMa0.5
Paraventricular hypothalamic nucleusipsiPa3
Suprachiasmatic nucleusipsiSCh1
A8 dopamine cells retrorubral group lateral partipsiRRFL2
A8 dopamine cells retrorubral group medial partipsiRRFm3
Retrochiasmatic areaipsiRCh3
Retrochiasmatic area lateral partipsiRChL3
Retrochiasmatic area medial partipsiRChm2
Retrochiasmatic area anterior medioventral partipsiRChAMV2
Parafascicular thalamic nucleusipsiPF-1
Posterior thalamic nuclear groupipsiPo3
Posterior thalamic nuclear group triangular partipsiPoT2
Suprageniculate thalamic nucleusipsiSG2
Subparafascicular thalamic nucleusipsiSPF-0.5
Subparafascicular thalamic nucleus caudal partipsiSPFc3
Subparafascicular thalamic nucleus medial partipsiSPFme2
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Tuber cinereum areaipsiTC3
Amygdaloid complexipsiAC2
Laterobasal nuclear complexipsiLBNC-0.5
Accessory basal nucleusipsiAB1
Basolateral amygdaloid nucleusipsiBL-0.5
Basolateral nucleus medial portionipsiBLmp-0.5
Basolateral nucleus rostral partipsiBLRP-0.5
Ventral basolateral nucleusipsiBLV-0.5
Basomedial amygdaloid nucleusipsiBM3
Anterior basomedial nucleusipsiBMA3
Posterior basomedial nucleusipsiBMP1
Lateral amygdaloid nucleusipsiLA3
Dorsolateral part of the lateral nucleusipsiLaDL3
Lateral nucleus dorsal partipsiLAd3
Lateral nucleus medial partipsiLAM1.5
Lateral nucleus ventral portionipsiLAVp3
Ventrolateral part of the lateral nucleusipsiLaVL2
Ventromedial part of the lateral nucleusipsiLaVM3
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus lateral division capsular partipsiCeC2
Central amygdaloid nucleus medial divisionipsiCeM3
Central amygdaloid nucleus medial division caudal partipsiCeMc-0.5
Central amygdaloid nucleus medial division rostral partipsiCeMR-0.5
Central amygdaloid nucleus rostral partipsiCerp2
Interstitial nucleus of the posterior limb of the anterior commissure medial partipsiIPACM1
Anterior amygdaloid areaipsiAA1
Medial amygdaloid nucleusipsiMe1
Amygdalostriatal transition areaipsiAStr3
Amygdalostriatal transition area rostrocaudal partipsiAStrrc-0.5
Intercalated nuclei of the amygdalaipsiI1
Globus pallidusipsiGP2
Lateral globus pallidusipsiLGP0
StriatumipsiSTR3
Caudate putamenipsiCPu3
Caudal striatumipsiCPuc1
Caudate putamen caudolateral partipsiCPucl2
Dorsal striatumipsiCPud2
Posterior caudate putamenipsiCPup3
Posterior caudate putamen medial partipsiCPupm2
Posterolateral part striatumipsiCPupL2
Ventrolateral striatumipsiCPuvl-0.5
Striatohypothalamic nucleusipsiSTHY3
Alveus of the hippocampusipsialv0.5
Entorhinal cortex anterior part deep layersipsiEntD1
Temporal association area 2ipsiTe22
Temporal association area 3ipsiTe32
Temporal association area 3 rostral part layer 1ipsiTe3RL13
Temporal association area 3 rostral part layer 4ipsiTe3RL43
Temporal association area 3 rostral part layer 5ipsiTe3RL53
Temporal association cortex 1ipsiTeA2
Ventral temporal association cortexipsiTev-0.5
Base of the temporal cortical areaipsiTEB2
Primary auditory cortexipsiAu11
Secondary auditory cortexipsiAu21
Secondary auditory cortex dorsal areaipsiAuD-0.5
Agranular insular cortex dorsal partipsiAID0.5
Agranular insular cortex posterior partipsiAIP-0.5
Visceral dysgranular insular cortexipsiDIv-0.5
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha3
Perirhinal cortex dorsal portionipsiPRhd2.5
Perirhinal cortex layer 3ipsiA35L33
Perirhinal cortex layer 4ipsiA35L43
Ectorhinal cortexipsiA362
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Secondary somatosensory cortexipsiS21
Medial geniculate nucleus medial partipsiMGM2
Medial geniculate nucleus ventral partipsiMGV2
Lateral septal nucleusipsiLS2
Lateral septal nucleus intermediate partipsiLSI2
Lateral septal nucleus ventrolateral partipsiLSvl2
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG2
Lateral periaqueductal graycontraLPAG2
Paragigantocellular reticular nucleuscontraPGi-0.5
Preoptic regioncontraPREO-0.5
Arcuate nucleuscontraArc-0.5
Subparafascicular thalamic nucleus caudal partcontraSPFc0.5
Subparafascicular thalamic nucleus medial partcontraSPFme0.5
Subparafascicular thalamic nucleus rostral partcontraSPFr0.5
Central amygdaloid nucleus anterior partcontraCeAn1

Input from

NameSideAbbr.WeightDetails
Ventral periaqueductal grayipsiVPAG-0.5
Inferior colliculusipsiICOL2
External cortex of the inferior colliculusipsiECIC-1
External cortex of the inferior colliculus layer 1ipsiECICL1-0.5
Dorsal cortex of the inferior colliculusipsiDCIC-1
Shell region of the central nucleus of the inferior colliculusipsiSIC2
Optic nerve layer of the superior colliculusipsiOp3
Superficial gray layer of the superior colliculusipsiSuG2
Intermediate gray layer of the superior colliculusipsiInG2
Deep gray layer of the superior colliculusipsiDpG2
Ventrolateral tegmental areaipsiVLTg2
Pedunculopontine tegmental nucleus pars dissipataipsiPPNd-0.5
Pons caudal partipsiPca-0.5
Medioventral part of the nucleus pontis oralisipsiPorMV-0.5
Gigantocellular reticular nucleus central partipsiGiCe-0.5
Gigantocellular reticular nucleus dorsal partipsiGidp-0.5
Lateral reticular nucleusipsiLRt3
Parvicellular reticular nucleusipsiPCRt-0.5
Spinal trigeminal nucleusipsiSp5nc-0.5
Nucleus of the solitary tractipsiSol-2
Parasolitary nucleusipsiPSol-2
Dorsal motor nucleus of vagusipsi10-2
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr-0.5
Lateral part of the dorsal paragigantocellular nucleusipsiDPGiL-0.5
Ventral medulla oblongataipsiVMeO-0.5
Ventral part of the ventral medulla oblongataipsiVMeOV-0.5
Substantia innominataipsiSI3
Lateral preoptic areaipsiLPO3
Lateral hypothalamic areaipsiLH2
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL3
Perifornical nucleusipsiPeF2
Subparafascicular thalamic nucleusipsiSPF3
Subparafascicular thalamic nucleus rostral partipsiSPFr2
Zona incertaipsiZI3
Lateral amygdaloid nucleusipsiLA3
Bed nucleus of the stria terminalis lateral divisionipsiBSTL2
Central amygdaloid nucleusipsiCe3
Amygdalostriatal transition areaipsiAStr-0.5
Globus pallidusipsiGP-0.5
Caudal globus pallidusipsiGPc2
Medial striatumipsiCPum2
Dorsal striatumipsiCPud1.5
Ventral striatumipsiCPuv1.5
Prelimbic cortex deep layersipsiPrLDL2.5
Infralimbic cortexipsiIL3
Parietal association cortexipsiPtA2
Auditory regionsipsiAU3
Primary auditory cortexipsiAu11
Secondary auditory cortexipsiAu21
Insular cortexipsiICX1
Agranular insular cortexipsiAI2.5
Perirhinal cortexipsiA352
Perirhinal cortex anterior portionipsiPRha3
Medial prefrontal cortexipsimPFC1
Medial agranular prefrontal cortex caudal partipsicAGm3
Primary somatosensory cortexipsiS11
Posteromedial barrel subfield A1 layer 5ipsiPMBSFA1L5-0.5
Posteromedial barrel subfield A1 layer 6ipsiPMBSFA1L6-0.5
Posteromedial barrel subfield A2 layer 5ipsiPMBSFA2L5-0.5
Posteromedial barrel subfield A2 layer 6ipsiPMBSFA2L6-0.5
Posteromedial barrel subfield A3 layer 5ipsiPMBSFA3L5-0.5
Posteromedial barrel subfield A3 layer 6ipsiPMBSFA3L6-0.5
Posteromedial barrel subfield A4 layer 5ipsiPMBSFA4L5-0.5
Posteromedial barrel subfield A4 layer 6ipsiPMBSFA4L6-0.5
Posteromedial barrel subfield B1 layer 5ipsiPMBSFB1L5-0.5
Posteromedial barrel subfield B1 layer 6ipsiPMBSFB1L6-0.5
Posteromedial barrel subfield B2 layer 5ipsiPMBSFB2L5-0.5
Posteromedial barrel subfield B2 layer 6ipsiPMBSFB2L6-0.5
Posteromedial barrel subfield B3 layer 5ipsiPMBSFB3L5-0.5
Posteromedial barrel subfield B3 layer 6ipsiPMBSFB3L6-0.5
Posteromedial barrel subfield B4 layer 5ipsiPMBSFB4L5-0.5
Posteromedial barrel subfield B4 layer 6ipsiPMBSFB4L6-0.5
Posteromedial barrel subfield C1 layer 5ipsiPMBSFC1L5-0.5
Posteromedial barrel subfield C1 layer 6ipsiPMBSFC1L6-0.5
Posteromedial barrel subfield C2 layer 5ipsiPMBSFC2L5-0.5
Posteromedial barrel subfield C2 layer 6ipsiPMBSFC2L6-0.5
Posteromedial barrel subfield C3 layer 5ipsiPMBSFC3L5-0.5
Posteromedial barrel subfield C3 layer 6ipsiPMBSFC3L6-0.5
Posteromedial barrel subfield C4 layer 5ipsiPMBSFC4L5-0.5
Posteromedial barrel subfield C4 layer 6ipsiPMBSFC4L6-0.5
Posteromedial barrel subfield C5 layer 5ipsiPMBSFC5L5-0.5
Posteromedial barrel subfield C5 layer 6ipsiPMBSFC5L6-0.5
Posteromedial barrel subfield D1 layer 5ipsiPMBSFD1L5-0.5
Posteromedial barrel subfield D1 layer 6ipsiPMBSFD1L6-0.5
Posteromedial barrel subfield D2 layer 5ipsiPMBSFD2L5-0.5
Posteromedial barrel subfield D2 layer 6ipsiPMBSFD2L6-0.5
Posteromedial barrel subfield D3 layer 5ipsiPMBSFD3L5-0.5
Posteromedial barrel subfield D3 layer 6ipsiPMBSFD3L6-0.5
Posteromedial barrel subfield D4 layer 5ipsiPMBSFD4L5-0.5
Posteromedial barrel subfield D4 layer 6ipsiPMBSFD4L6-0.5
Posteromedial barrel subfield D5 layer 5ipsiPMBSFD5L5-0.5
Posteromedial barrel subfield D5 layer 6ipsiPMBSFD5L6-0.5
Posteromedial barrel subfield D6 layer 5ipsiPMBSFD6L5-0.5
Posteromedial barrel subfield D6 layer 6ipsiPMBSFD6L6-0.5
Posteromedial barrel subfield E1 layer 5ipsiPMBSFE1L5-0.5
Posteromedial barrel subfield E1 layer 6ipsiPMBSFE1L6-0.5
Posteromedial barrel subfield E2 layer 5ipsiPMBSFE2L5-0.5
Posteromedial barrel subfield E2 layer 6ipsiPMBSFE2L6-0.5
Posteromedial barrel subfield E3 layer 5ipsiPMBSFE3L5-0.5
Posteromedial barrel subfield E3 layer 6ipsiPMBSFE3L6-0.5
Posteromedial barrel subfield E4 layer 5ipsiPMBSFE4L5-0.5
Posteromedial barrel subfield E4 layer 6ipsiPMBSFE4L6-0.5
Posteromedial barrel subfield E5 layer 5ipsiPMBSFE5L5-0.5
Posteromedial barrel subfield E5 layer 6ipsiPMBSFE5L6-0.5
Posteromedial barrel subfield E6 layer 5ipsiPMBSFE6L5-0.5
Posteromedial barrel subfield E6 layer 6ipsiPMBSFE6L6-0.5
Posteromedial barrel subfield E7 layer 5ipsiPMBSFE7L5-0.5
Posteromedial barrel subfield E7 layer 6ipsiPMBSFE7L6-0.5
Secondary somatosensory cortexipsiS21
Secondary somatosensory cortex caudal partipsiS2C-0.5
Medial geniculate nucleus medial partipsiMGM-1
Lateral septal nucleus anterior partipsiLSa3
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Lumbar segment 6ipsiL61
Lateral periaqueductal graycontraLPAG1
External cortex of the inferior colliculuscontraECIC-0.5
Optic nerve layer of the superior colliculuscontraOp1.5
Superior colliculus deep layerscontraSCd1
Ventrolateral tegmental areacontraVLTg1
Pedunculopontine tegmental nucleus pars dissipatacontraPPNd-0.5
Pons caudal partcontraPca-0.5
Medioventral part of the nucleus pontis oraliscontraPorMV-0.5
Lateral parabrachial nucleuscontraLPB1
Gigantocellular reticular nucleus central partcontraGiCe-0.5
Gigantocellular reticular nucleus dorsal partcontraGidp-0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Spinal trigeminal nucleuscontraSp5nc-0.5
Cuneate nucleuscontraCu-0.5
GracilecontraGra-0.5
Lateral part of the dorsal paragigantocellular nucleuscontraDPGiL0
Dorsal bank of rhinal fissurecontraDBrf2.5
Lateral cervical nucleuscontraLatC2
Spinal cord layer 3 C1contraSCL3C12
Spinal cord layer 4 C1contraSCL4C12
Spinal cord layer 1 C1contraSCL1C12
Spinal cord layer 2 C1contraSCL2C12
Spinal cord layer 3 C2contraSCL3C23
Spinal cord layer 4 C2contraSCL4C23
Spinal cord layer 1 C2contraSCL1C23
Spinal cord layer 2 C2contraSCL2C23
Thoracal segment 1contraT1-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 4 T1contraSCL4T1-0.5
Thoracal segment 2contraT2-0.5
Spinal cord layer 5 T2contraSCL5T2-0.5
Spinal cord layer 4 T2contraSCL4T2-0.5
Thoracal segment 3contraT3-0.5
Spinal cord layer 5 T3contraSCL5T3-0.5
Spinal cord layer 4 T3contraSCL4T3-0.5
Thoracal segment 4contraT4-0.5
Spinal cord layer 5 T4contraSCL5T4-0.5
Spinal cord layer 4 T4contraSCL4T4-0.5
Thoracal segment 5contraT5-0.5
Spinal cord layer 5 T5contraSCL5T5-0.5
Spinal cord layer 4 T5contraSCL4T5-0.5
Thoracal segment 6contraT6-0.5
Spinal cord layer 5 T6contraSCL5T6-0.5
Spinal cord layer 4 T6contraSCL4T6-0.5
Thoracal segment 7contraT7-0.5
Spinal cord layer 5 T7contraSCL5T7-0.5
Spinal cord layer 4 T7contraSCL4T7-0.5
Thoracal segment 8contraT8-0.5
Spinal cord layer 5 T8contraSCL5T8-0.5
Spinal cord layer 4 T8contraSCL4T8-0.5
Thoracal segment 9contraT9-0.5
Spinal cord layer 5 T9contraSCL5T9-0.5
Spinal cord layer 4 T9contraSCL4T9-0.5
Thoracal segment 10contraT10-0.5
Spinal cord layer 5 T10contraSCL5T10-0.5
Spinal cord layer 4 T10contraSCL4T10-0.5
Thoracal segment 11contraT11-0.5
Spinal cord layer 5 T11contraSCL5T11-0.5
Spinal cord layer 4 T11contraSCL4T11-0.5
Thoracal segment 12contraT12-0.5
Spinal cord layer 5 T12contraSCL5T12-0.5
Spinal cord layer 4 T12contraSCL4T12-0.5
Thoracal segment 13contraT13-0.5
Spinal cord layer 5 T13contraSCL5T13-0.5
Spinal cord layer 4 T13contraSCL4T13-0.5
Lumbar segment 1contraL1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 6 L1contraSCL6L1-0.5
Lumbar segment 2contraL2-0.5
Spinal cord layer 5 L2contraSCL5L2-0.5
Spinal cord layer 6 L2contraSCL6L2-0.5
Lumbar segment 3contraL3-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 6 L3contraSCL6L3-0.5
Lumbar segment 4contraL4-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 6 L4contraSCL6L4-0.5
Lumbar segment 5contraL5-0.5
Spinal cord layer 5 L5contraSCL5L5-0.5
Spinal cord layer 6 L5contraSCL6L5-0.5
Lumbar segment 6contraL6-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 6 L6contraSCL6L6-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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