University of Rostock

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Rat connectome



Interfascicular nucleus right


Abbreviation
IF
Color       
Superior regionsVentral tegmental area A10 medial nuclei

SynonymsAbbr.Language
Nucleus interfascicularis  
Interfascicular nucleus of the raphe Eng
Interfascicular nucleus rapheLIFEng
Interfascicular nucleus of the ventral tegmental areaIFN 
Interfascicular regionIFEng
Interfascicular nucleusIFEng
Interfascicular nucleus  

SubregionsSide
Interfascicular nucleus apical partright
Interfascicular nucleus caudal partright
Interfascicular nucleus intermediate partright
Interfascicular nucleus lateral partright
Interfascicular nucleus rostral partright

Output to

NameSideAbbr.WeightDetails
Median raphe nucleuscontraMnR2
Basal forebraincontraBAF0.5
Lateral habenular nucleus medial partcontraLHbM3
Dentate gyruscontraDG1
Field CA1 of hippocampuscontraCA11
Field CA3 of hippocampuscontraCA31
Subiculum ventral partcontraSv-0.5
Prelimbic cortexcontraPrL1
Phrenic motoneurons of lamina 9 C3contraPh9C32
Phrenic motoneurons of lamina 9 C4contraPh9C42
Phrenic motoneurons of lamina 9 C5contraPh9C52
Nucleus of DarkschewitschipsiDk0
Oculomotor nucleusipsi30
Ventral tegmental area anterior part ventral layeripsiVTAAv-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Edinger Westphal nucleusipsiEW3
Pontine reticular nucleusipsiPRN-0.5
Median raphe nucleusipsiMnR2
Basal forebrainipsiBAF1
Diagonal band of BrocaipsiDBB2
Substantia innominata anterior partipsiSIA1
Substantia innominata posterior partipsiSIP2
Magnocellular preoptic nucleusipsiMCPO2
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral zoneipsiLHA-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area lateral partipsiLHAL-0.5
Medial division of the hypothalamusipsiMdH-0.5
Mammillary bodyipsiCMAM-0.5
Reticular thalamic nucleus medial partipsiRtm2
Basal portion of the ventral complex of thalamic nucleiipsiBVNT-0.5
Zona incertaipsiZI-0.5
HabenulaipsiHAB-0.5
Lateral habenular nucleusipsiLHb2
Lateral habenular nucleus lateral partipsiLHbL1
Lateral habenular nucleus medial partipsiLHbM3
Medio lateral habenular nucleusipsiMLHb2
Medial habenular nucleusipsiMHb-0.5
Medial habenular nucleus dorsal partipsiMHbd0
Medial habenular nucleus lateral partipsiMHbL0
Junction medial and lateral habenulaipsiHABj1
Medial forebrain bundleipsimfb-2
Amygdaloid complexipsiAC0.5
Basolateral amygdaloid nucleusipsiBL1
Basomedial amygdaloid nucleusipsiBM1
Bed nucleus of the stria terminalisipsiBST0.5
Central amygdaloid nucleusipsiCe1
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0.5
Sublenticular extended amygdalaipsiSLEA0.5
Rostral part of claustrumipsiRCl0
Globus pallidusipsiGP0.5
Ventral pallidumipsiVP3
Ventral pallidum ventromedial partipsiVPvm3
Accumbens nucleusipsiAc3
Accumbens nucleus anterolateral partipsiAcAL0
Accumbens nucleus anteromedial partipsiAcAM1
Accumbens nucleus caudoventral partipsiAcCV0
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus shellipsiAcbSh1
Lateral accumbens shellipsiAcbShl1
Medial accumbens shellipsiAcbShm3
Caudomedial accumbensipsiAcbCM3
Dorsal tip of the dorsomedial accumbens nucleusipsiACBdmt-0.5
Lateral nucleus accumbensipsiAcl0.5
Medial accumbensipsiAcbM2
Caudate putamenipsiCPu2
Dorsal striatumipsiCPud0.5
HippocampusipsiHIPP0
Dorsal hippocampusipsiHIPPd2
Dentate gyrusipsiDG2
Field CA1 of hippocampusipsiCA12
Field CA3 of hippocampusipsiCA32
Subiculum ventral partipsiSv-0.5
Piriform cortexipsiPir3
Cingulate cortexipsiCg0
Prelimbic cortexipsiPrL2
Frontal cortex area 2ipsiFr21
Prefrontal cortexipsiPFC2
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx1
Medial prefrontal cortexipsimPFC1
Olfactory tubercle lateral partipsiTuOL0.5
Olfactory tubercle medial partipsiTuOMP1.5
Lateral septal nucleusipsiLS-0.5
Lateral septal nucleus rostral partipsiLSr-0.5
Lateral septal nucleus ventral partipsiLSV1
Septal region rostral partipsiSERr1
Phrenic motoneurons of lamina 9 C3ipsiPh9C31
Phrenic motoneurons of lamina 9 C4ipsiPh9C41
Phrenic motoneurons of lamina 9 C5ipsiPh9C51
Thoracal segment 3ipsiT3-0.5
Thoracal segment 4ipsiT4-0.5

Input from

NameSideAbbr.WeightDetails
Central graycontraCG1
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA70
Locus coeruleuscontraLC2
C1 adrenaline cellscontraC11
C2 adrenaline cellscontraC20.5
C3 adrenaline cellscontraC30.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA20.5
Tuberal nucleuscontraTU1
Posterior hypothalamic nucleus caudal partcontraPHCa0
Posterior hypothalamic nucleus rostral partcontraPHRo0
Ventromedial hypothalamic nucleus anterior partcontraVMHA0.5
Ventromedial hypothalamic nucleus central partcontraVMHC0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL0.5
Central grayipsiCG3
Oculomotor systemipsiOCS1
Red nucleusipsiR1.5
Superior colliculusipsiSC1
Substantia nigra A9ipsiSN0
Ventral tegmental area A10 caudal partipsiVTAcp1
Ventral tegmental area A10 caudoventromedialipsiVTACVM2.5
Ventral tegmental area A10 ventral partipsiVTAv2
Ventral tegmental area A10 ventrolateral partipsiVTAvl2
Ventral tegmental area rostral ventrolateral partipsiVTARVL2.5
Ventral tegmental area rostral ventromedial partipsiVTARVM1
Ventral tegmental area caudodorsomedial partipsiVTACDM2.5
Central cerbellar nucleiipsiCERcn0
Interposed cerebellar nucleiipsiICN1
Lateral cerebellar nucleusipsiCERL2
Medial cerebellar nucleusipsiMed0
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA70
Locus coeruleusipsiLC2
Locus coeruleus caudal partipsiLCca-0.5
Nucleus incertus pars compactaipsiNIc3
Pontine reticular nucleusipsiPRN0
Parabrachial nucleusipsiPB0
Subcoeruleus nucleusipsiSubC-0.5
C1 adrenaline cellsipsiC11
C2 adrenaline cellsipsiC20
C3 adrenaline cellsipsiC30.5
Principal sensory trigeminal nucleusipsiPr50
Vestibular nucleiipsiVnc0
Dorsal raphe nucleusipsiDR1
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR2
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg0
A1 noradrenergic cellsipsiA10.5
A2 noradrenergic cellsipsiA20.5
Cuneate nucleusipsiCu0
Diagonal band of BrocaipsiDBB1
Substantia innominataipsiSI2
Preoptic regionipsiPREO2
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA2
Medial preoptic area dorsolateral partipsiMPADL3
Preoptic nucleusipsiPREn-0.5
Magnocellular preoptic nucleusipsiMCPO1
Medial preoptic nucleusipsiMPO-0.5
Dorsal tenia tectaipsiDTT-0.5
HypothalamusipsiHYPO-0.5
Dorsal regionipsiDHR1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area juxtadorsomedial regionipsiJDM0
Lateral hypothalamic area perifornical partipsiPFx3
Reticular lateral areaipsiRLA0
Tuberal nucleusipsiTU2
Anterior hypothalamic areaipsiAHA3
Anterior hypothalamic nucleusipsiAHn3
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM3
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleus caudal partipsiPHCa0
Posterior hypothalamic nucleus rostral partipsiPHRo2
Tuberal areaipsiTA1
Ventromedial hypothalamic nucleusipsiVMH3
Ventromedial hypothalamic nucleus anterior partipsiVMHA1
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleusipsiArc0
Paraventricular hypothalamic nucleusipsiPa0.5
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag1
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
Mammillary bodyipsiCMAM1
Supramammillar nucleusipsiSuM2
Zona incertaipsiZI1
Forel field H1ipsiFFH11
Forel field H2ipsiFFH21
HabenulaipsiHAB-0.5
Lateral habenular nucleusipsiLHb1
Lateral habenular nucleus medial partipsiLHbM4
Medial habenular nucleusipsiMHb3
Amygdaloid complexipsiAC-0.5
Anterior basomedial nucleusipsiBMA1
Extended amygdalaipsiEXA-0.5
Bed nucleus of the stria terminalisipsiBST-0.5
Bed nucleus of the stria terminalis anterior division dorsomedial nucleusipsiBSTdm1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM-0.5
Bed nucleus of the stria terminalis anterior ventral areaipsiBSTAV1
Bed nucleus of the stria terminalis principal nucleusipsiBSTpr1
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt3
Posterolateral cortical nucleusipsiPLCo3
Medial amygdaloid nucleus anterodorsal partipsiMeAD1
ClaustrumipsiCl-0.5
Accumbens nucleusipsiAc1
Accumbens nucleus caudomedial shellipsiAcbShcm2
Parasubthalamic nucleusipsiPSTh2
Cingulate cortexipsiCg0
Anterior cingulate cortexipsiACC-0.5
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL3
Parietal association cortexipsiPtA0
Suprarhinal regionipsiSRR0
Prefrontal cortexipsiPFC-0.5
Orbital cortexipsiOrC-0.5
Olfactory tubercleipsiTuO0
Septal regionipsiSER-0.5
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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