| Name | Side | Abbr. | Weight | Details |
|---|
| Nuclei of the lateral lemniscus | contra | NLL | 0.5 | |
| Laterodorsal tegmental nucleus | contra | LDTg | 0.5 | |
| Dorsal tegmental nucleus | contra | DTg | 0.5 | |
| Pedunculopontine tegmental nucleus | contra | PPTg | 0.5 | |
| Locus coeruleus | contra | LC | 0.5 | |
| Lateral parabrachial nucleus | contra | LPB | 0.5 | |
| Median raphe nucleus | contra | MnR | 2 | |
| Rostral ventral respiratory group | contra | RVRG | 1 | |
| Medial preoptic nucleus | contra | MPO | 0.5 | |
| Anteroventral periventricular nucleus 2 | contra | AVPV2 | 0.5 | |
| Cingulate cortex | contra | Cg | 0.5 | |
| Anterior cingulate cortex | contra | ACC | 1 | |
| Prelimbic cortex | contra | PrL | 0.5 | |
| Infralimbic cortex | contra | IL | 1 | |
| Medial agranular prefrontal cortex | contra | AGm | 1 | |
| Medial orbital cortex | contra | MO | 0.5 | |
| Nuclei of the lateral lemniscus | ipsi | NLL | 0.5 | |
| Ventral tegmental area A10 | ipsi | VTA | -0.5 | |
| Laterodorsal tegmental nucleus | ipsi | LDTg | 0.5 | |
| Ventral tegmental nucleus | ipsi | VTg | -0.5 | |
| Dorsal tegmental nucleus | ipsi | DTg | 0.5 | |
| Dorsal tegmental nucleus ventromedial part | ipsi | DTgVM | 2 | |
| Pedunculopontine tegmental nucleus | ipsi | PPTg | 0.5 | |
| Locus coeruleus | ipsi | LC | 1 | |
| Pons oral part | ipsi | Por | -0.5 | |
| Medial reticular formation | ipsi | RFm | 3 | |
| Laterodorsal portions of the midbrain reticular formation | ipsi | MRFLd | 4 | |
| Pontine reticular nucleus central part | ipsi | NRTPc | -0.5 | |
| Lateral parabrachial nucleus | ipsi | LPB | 1 | |
| Boetzinger complex | ipsi | Bo | 1 | |
| Dorsal raphe nucleus | ipsi | DR | 1 | |
| Median raphe nucleus | ipsi | MnR | 2 | |
| Superior central raphe nucleus | ipsi | CS | -0.5 | |
| Raphe magnus nucleus | ipsi | RMg | 2 | |
| Raphe obscurus nucleus | ipsi | ROb | -0.5 | |
| Rostral ventral respiratory group | ipsi | RVRG | 1 | |
| Diagonal band of Broca | ipsi | DBB | 3 | |
| Nucleus of the horizontal limb of the diagonal band | ipsi | HDB | 2 | |
| Nucleus of the vertical limb of the diagonal band | ipsi | VDB | 1 | |
| Medial septal nucleus | ipsi | MS | 3 | |
| Basal nucleus Meynert | ipsi | B | 2 | |
| Substantia innominata | ipsi | SI | 2 | |
| Magnocellular preoptic nucleus | ipsi | MCPO | 2 | |
| Medial preoptic nucleus | ipsi | MPO | 0.5 | |
| Lateral zone | ipsi | LHA | -0.5 | |
| Lateral hypothalamic area | ipsi | LH | -0.5 | |
| Lateral hypothalamic area lateral part | ipsi | LHAL | -0.5 | |
| Medial division of the hypothalamus | ipsi | MdH | -0.5 | |
| Anteroventral periventricular nucleus 2 | ipsi | AVPV2 | 0.5 | |
| Mammillary body | ipsi | CMAM | -0.5 | |
| Anteroventral thalamic nucleus | ipsi | AV | 0 | |
| Intralaminar nuclei of the dorsal thalamus | ipsi | ILM | -0.5 | |
| Central medial thalamic nucleus | ipsi | CM | 1 | |
| Centrolateral thalamic nucleus | ipsi | CL | 2 | |
| Paracentral thalamic nucleus caudal part | ipsi | PC-c | 0 | |
| Paracentral thalamic nucleus rostral part | ipsi | PC-r | 0 | |
| Parafascicular thalamic nucleus lateral part | ipsi | PFL | 1 | |
| Parafascicular thalamic nucleus medial part | ipsi | PFM | 1 | |
| Rhomboid thalamic nucleus | ipsi | Rh | 1 | |
| Posterior thalamic nuclear group | ipsi | Po | 2 | |
| Mediodorsal thalamic nucleus | ipsi | MD | 3 | |
| Intermediodorsal thalamic nucleus | ipsi | IMD | 1 | |
| Submedius thalamic nucleus | ipsi | Sub | 0 | |
| Paratenial thalamic nucleus | ipsi | PT | 1 | |
| Paraventricular thalamic nucleus anterior part | ipsi | PVA | 2 | |
| Paraventricular thalamic nucleus medial part | ipsi | PVM | 0 | |
| Paraventricular thalamic nucleus posterior part | ipsi | PVP | 2 | |
| Reuniens thalamic nucleus | ipsi | Re | 0 | |
| Ventrolateral thalamic nucleus | ipsi | VL | 2 | |
| Ventral posterior thalamic nucleus parvicellular part | ipsi | VPPC | 0 | |
| Ventral posterolateral thalamic nucleus | ipsi | VPL | 2 | |
| Ventral posteromedial thalamic nucleus | ipsi | VPM | 2 | |
| Ventromedial thalamic nucleus caudal part | ipsi | VMc | 1 | |
| Oval paracentral thalamic nucleus | ipsi | OPC | 0 | |
| Reticular thalamic nucleus dorsal part | ipsi | RtD | 0.5 | |
| Reticular thalamic nucleus ventral part | ipsi | RtV | 0.5 | |
| Basal portion of the ventral complex of thalamic nuclei | ipsi | BVNT | -0.5 | |
| Zona incerta | ipsi | ZI | -0.5 | |
| Habenula | ipsi | HAB | -0.5 | |
| Lateral habenular nucleus | ipsi | LHb | 1 | |
| Medial forebrain bundle | ipsi | mfb | -2 | |
| Basal nucleus | ipsi | Bnc | 2 | |
| Basolateral amygdaloid nucleus | ipsi | BL | 1 | |
| Anterior basolateral nucleus | ipsi | BLA | 0.5 | |
| Basomedial amygdaloid nucleus | ipsi | BM | 1 | |
| Dorsolateral part of the lateral nucleus | ipsi | LaDL | -0.5 | |
| Ventrolateral part of the lateral nucleus | ipsi | LaVL | -0.5 | |
| Ventromedial part of the lateral nucleus | ipsi | LaVM | -0.5 | |
| Bed nucleus of the stria terminalis | ipsi | BST | 2 | |
| Bed nucleus of the stria terminalis anterior dorsal area | ipsi | BSTAD | 2 | |
| Bed nucleus of the stria terminalis anterior lateral area | ipsi | BSTAL | 2 | |
| Bed nucleus of the stria terminalis medial division posterointermediate part | ipsi | BSTMPI | -0.5 | |
| Central amygdaloid nucleus | ipsi | Ce | 2 | |
| Interstitial nucleus of the posterior limb of the anterior commissure | ipsi | IPAC | 1 | |
| Interstitial nucleus of the posterior limb of the anterior commissure medial part | ipsi | IPACM | 2 | |
| Sublenticular extended amygdala | ipsi | SLEA | 2 | |
| Medial division of the sublenticular extended amygdala | ipsi | SLEAm | -1 | |
| Medial amygdaloid nucleus | ipsi | Me | -0.5 | |
| Globus pallidus | ipsi | GP | 0.5 | |
| Ventral pallidum | ipsi | VP | 1 | |
| Accumbens nucleus | ipsi | Ac | 3 | |
| Accumbens nucleus anteromedial part | ipsi | AcAM | 2 | |
| Accumbens nucleus core | ipsi | AcbC | 1 | |
| Accumbens nucleus shell | ipsi | AcbSh | 1 | |
| Lateral accumbens shell | ipsi | AcbShl | 1 | |
| Medial accumbens shell | ipsi | AcbShm | 3 | |
| Lateral nucleus accumbens | ipsi | Acl | 1 | |
| Medial accumbens | ipsi | AcbM | 1 | |
| Dorsal striatum | ipsi | CPud | 0.5 | |
| Hippocampus | ipsi | HIPP | -0.5 | |
| Dorsal hippocampus | ipsi | HIPPd | 0 | |
| Field CA1 of hippocampus dorsal | ipsi | CA1d | 0 | |
| Glia limitans layer | ipsi | gliaLim | 3 | |
| Cingulate cortex | ipsi | Cg | 1 | |
| Anterior cingulate cortex | ipsi | ACC | 1 | |
| Cingulate cortex area 1 | ipsi | Cg1 | 2 | |
| Prelimbic cortex | ipsi | PrL | 2 | |
| Infralimbic cortex | ipsi | IL | 2 | |
| Agranular insular cortex dorsal part deep layers | ipsi | AIDdL | -0.5 | |
| Agranular insular cortex dorsal part superficial layers | ipsi | AIDsL | 3 | |
| Dysgranular insular cortex | ipsi | DI | 0 | |
| Granular insular cortex | ipsi | GI | 0 | |
| Prefrontal cortex | ipsi | PFC | 3 | |
| Lateral agranular prefrontal cortex | ipsi | AGl | 3 | |
| Forelimb motor cortex | ipsi | FMCx | 1 | |
| Medial prefrontal cortex | ipsi | mPFC | 3 | |
| Medial agranular prefrontal cortex | ipsi | AGm | 2 | |
| Anterior medial frontal cortex | ipsi | AMFC | 1 | |
| Lateral orbital cortex | ipsi | LO | -0.5 | |
| Medial orbital cortex | ipsi | MO | 2 | |
| Ventrolateral orbital area | ipsi | VLO | 3 | |
| Ventrolateral orbital area posterior part | ipsi | VLOp | 1 | |
| Olfactory tubercle lateral part | ipsi | TuOL | 1 | |
| Olfactory tubercle medial part | ipsi | TuOMP | 3 | |
| Lateral septal nucleus | ipsi | LS | 1 | |
| Supraependymal terminals of 3d ventricle | ipsi | set3V | 3 | |
| Subependymal terminals under the ependyma of the 3d ventricle | ipsi | sete3V | 3 | |
| 4th ventricle | ipsi | 4V | 3 | |
| Aqueduct | ipsi | Aq | 3 | |
| Pterygopalatine ganglion | ipsi | AutoPpG | -0.5 | |
Homepage
Rat
connectome
